Gene detail information of Glyur000544s00017416.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04720.18.00E-48pathogenesis-related 4
NRKEH43013.15.88E-79Chitinase / Hevein / PR-4 / Wheatwin2 [Medicago truncatula]
Swissprottr|P29063|PR4B_TOBAC1.00E-70Pathogenesis-related protein PR-4B (Precursor)
trEMBLtr|A0A072VNL8|A0A072VNL8_MEDTR2.00E-79Chitinase / Hevein / PR-4 / Wheatwin2 {ECO:0000313|EMBL:KEH43013.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0054415942659+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0042742  defense response to bacterium

GO:0050832  defense response to fungus



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000544s00017416.1PF00967.12Barwin321505.00E-64


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.946
SRR1783600control9.895
SRR1783602moderate drought stress6.046
SRR1811619moderate drought stress5.960

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain72.255
DRR006520Root Summer glycyrrhizin high producing strain71.903
DRR006521Root Winter glycyrrhizin high producing strain225.274
DRR006522Root Winter glycyrrhizin high producing strain219.138
DRR006523Root Summer glycyrrhizin low producing strain11.028
DRR006524Root Summer glycyrrhizin low producing strain11.162
DRR006525Leaf Summer glycyrrhizin high producing strain1256.941
DRR006526Leaf Summer glycyrrhizin high producing strain1252.636

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.380
SRR2868004Drought Stress(Tissue:root)2.376
SRR2967015Control (Tissue:root)2.756

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave239.813
SRR9715740Leave43.293
SRR9715741Leave109.771
SRR9715739Root16.253
SRR9715742Root15.225
SRR9715743Root16.224

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.950
SRR8749028MeJA induced 9h5.278
SRR8749029MeJA induced 9h8.571
SRR8749030Uninduced9.060
SRR8749031Uninduced10.091
SRR8749032Uninduced19.752

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.588
SRR8400027Control-Root33.086

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved