Gene detail information of Glyur000544s00017419.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30580.1 | 2.00E-92 | DREB2A-interacting protein 2 |
| NR | KHN18060.1 | 0 | E3 ubiquitin protein ligase DRIP2 [Glycine soja] |
| Swissprot | tr|Q94AY3|DRIP2_ARATH | 3.00E-123 | E3 ubiquitin protein ligase DRIP2 |
| trEMBL | tr|I1LBM4|I1LBM4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00544 | 10881 | 16145 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000544s00017419.1 | PF13923.1 | zf-C3HC4_2 | 22 | 62 | 5.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.962 |
| SRR1783600 | control | 22.247 |
| SRR1783602 | moderate drought stress | 12.236 |
| SRR1811619 | moderate drought stress | 12.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.543 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.849 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.740 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.377 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.908 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.751 |
| SRR2967015 | Control (Tissue:root) | 20.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.419 |
| SRR9715740 | Leave | 13.183 |
| SRR9715741 | Leave | 16.430 |
| SRR9715739 | Root | 7.883 |
| SRR9715742 | Root | 19.285 |
| SRR9715743 | Root | 16.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.203 |
| SRR8749028 | MeJA induced 9h | 10.773 |
| SRR8749029 | MeJA induced 9h | 14.601 |
| SRR8749030 | Uninduced | 10.509 |
| SRR8749031 | Uninduced | 4.284 |
| SRR8749032 | Uninduced | 4.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.759 |
| SRR8400027 | Control-Root | 23.361 |