Gene detail information of Glyur000544s00017428.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37690.10phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative
NRXP_003536132.10PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform X1 [Glycine max]
COGYP_001855604.15.00E-105phosphoribosylaminoimidazole carboxylase [Kocuria rhizophila DC2201]
Swissprottr|P55195|PUR6_VIGAC0Phosphoribosylaminoimidazole carboxylase, chloroplastic (Precursor; Fragment)
trEMBLtr|K7LJS8|K7LJS8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G30611.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005446311771677+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11808ADE2 EC:4.1.1.21 Purine metabolism map00230


Gene Ontology

biological_process

GO:0006189  'de novo' IMP biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004638  phosphoribosylaminoimidazole carboxylase activity

GO:0005524  ATP binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000544s00017428.1PF02222.17ATP-grasp1893602.30E-58
Glyur000544s00017428.1PF00731.15AIRC4686277.60E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.064
SRR1783600control9.980
SRR1783602moderate drought stress9.355
SRR1811619moderate drought stress9.333

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.058
DRR006520Root Summer glycyrrhizin high producing strain11.821
DRR006521Root Winter glycyrrhizin high producing strain5.734
DRR006522Root Winter glycyrrhizin high producing strain5.641
DRR006523Root Summer glycyrrhizin low producing strain8.950
DRR006524Root Summer glycyrrhizin low producing strain9.006
DRR006525Leaf Summer glycyrrhizin high producing strain18.045
DRR006526Leaf Summer glycyrrhizin high producing strain18.154

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.292
SRR2868004Drought Stress(Tissue:root)14.390
SRR2967015Control (Tissue:root)14.537

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.608
SRR9715740Leave23.500
SRR9715741Leave28.443
SRR9715739Root3.526
SRR9715742Root14.264
SRR9715743Root11.843

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.764
SRR8749028MeJA induced 9h7.798
SRR8749029MeJA induced 9h6.496
SRR8749030Uninduced5.296
SRR8749031Uninduced2.313
SRR8749032Uninduced2.604

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.498
SRR8400027Control-Root15.272

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved