Gene detail

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Gene detail information of Glyur000544s00017428.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37690.1	0	phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative
NR	XP_003536132.1	0	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform X1 [Glycine max]
COG	YP_001855604.1	5.00E-105	phosphoribosylaminoimidazole carboxylase [Kocuria rhizophila DC2201]
Swissprot	tr\|P55195\|PUR6_VIGAC	0	Phosphoribosylaminoimidazole carboxylase, chloroplastic (Precursor; Fragment)
trEMBL	tr\|K7LJS8\|K7LJS8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G30611.2}

Sequence

Transcript Sequence

>Glyur000544s00017428.3
CGTTTATATTTGAAAAATAGGCATCCCTAACCTAAGACAAGACATTAGGCACGTTCTCACGGACTAGGAAGGTGTTTGNCGCTGCGAAAACTGAAGTCGAGTATGCTCCACAGCGCGCGCACAGTGCTGTCAGGGCACACCGGCACTTCAGCTTTTGCCTTCAGACCCTCTCATCCCTCTACCAAGACATCTTCTTCACTCGGCTTCTACATGGAGCAACCTCCTCTTTCATCTTCTCTGAAGCTAAAACAGTGTCACCAGCCCCGCCTCACTTGTCAAGCATCACAGGAACAAGATGCAGTTTCTCTAAGGAATGAAGAATCACCTGTTCATGGACCGTCTGAAACNGTTGTTGGGGTTTTGGGAGGAGGTCAATTGGGTCGCATGCTATGTCAAGCTGCTTCTAAAATGGCAATGAAGGTCATGGTTTTAGATCCACAGGAGAACTGCCCGGCGAGTTCCCTGTCATATCATCATATGGTTGGAAGCTTTGATGACAGCACTACAGTTGAGGAATTTGCAAAGAGGTTCAAGTTTTTATGCATTAGATGTTTGCTTTGAATTTGTCATTTGACTCAGTTCCTGTATCACTTATGTGCTGGTTTGAAATGGTGTTCAGATGTGGAGTTTTAACAGTTGAAATTGAACATGTTGATGTTGCTACATTGGAAAAACTTGAGAAACAAGGAGTTGACTGCCAACCCAAAGCCTCCACTTTACGAATTATTCAGGATAAGTATCAGCAAAAGGTTCACTTCTCTCAGCATGGCATTCCGCTTCCCGAATTTAGGCGGATAGATGATCTTGAAAGTGCTAAGAAAGTAGGGGAACTCTTTGGCTATCCTCTTATGATCAAGAGTAGGAGATTAGCTTATGATGGACGAGGAAATGCAGTCGCTAAAAGTGAAGAGGAACTTCCTTCTGCTGTGGATGCTCTTGGAGGATTTGATCGTGGTTTATATGCTGAAAAATGGGCACCTTTTGTCAAGGAACTAGCTGTCATTGTGGCGAGAGGAAGAGACAGTTTGATTTCATGCTATCCTGTCGTTGAAACCATTCACAGGTAACATGCAGAACACACATATGCTATTAATATGAAAGATTTTAAATCAAAGTTTATCACAAATCAAATTCAAAACCTAGATTATGGTAAAAATGAATCAGCAATGTACNGTTTCATCTTCCTTATATACCTGCTTGAGGATTTATGTTTTGTTCTAGGGACAACATATGTCACATAGTTAAAGCTCCAGCTAATGTAAAATGGAAGATTAGGGAGCGTGCCACTGAAGTTGCTTTCAATGCTGTTAACTCTCTAGAAGGTGCTGGTGTGTTTGCAGTTGAGTTGTTCTTGACTAGTGATGGACAGATTTTATTAAATGAAGTAGCACCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAGCATTTGCGGGCTGTTGTTGGTCTTCCTCTTGGTGATCCATCAATGAAAACTCCAGCTGCTATCATGTACAATATACTAGGGGAAGAAGAGGGGGAGCTTGGTTTTCAATTAGCTCATCAATTGATCAAAAGGGCATTGACCATCCCTGGGGCTACTGTTCATTGGTATGATAAGCCAGAAATGAGAAAGCAACGGAAGATGGGCCATATAACTATTGTTGGGCCTTCCCTAGGCAATGTTGAAAGCAATCTTGCGAAAGTGGTGGAAGGGGAAAGATTAGATGACAAGACTGCAGTTACTCCACGTGTGGGGATCATAATGGGTTCTGATTCAGATCTGCCCGTTATGAAAAGTGCTGCTGAAATCTTGGAGATGTTTGGTGTACCTCATGAGGTANTATTATGTATATGCATCATATTTCAGGTAAGAATAGTTTCNGCACACCGGACTCCAGATTTGATGTTTTCTTATGCAATGTCTGCTCATGAACGAGGCATACAAGTTATTATTGCTGGTGCTGGTGGGGCAGCTCACTTGCCTGGTATGGTTGCTGCTCTTACTCCCTTGCCTGTTATTGGTGTTCCTGTGCGTGGTTCTTCTCTGGATGGACTCGATTCACTCTTGTCGATTGTCCAGATGCCTAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATGCTGGGCTATTGGCAGTGAGGATTTTAGGTGTTGCCGATGATAATCTTCTGTCAAGGATGAGCCAATATCAAGAGGACCAAAGAGAGAGCGTTTTGAGGAAAGGAGATAAATTAGAAAATCTTGGTTGGGAATCTTACTTAAATAGCACTTAGTAGTTAGTTGAACCCATTTATTTGGCGATTCTTTTAGGTCTATTCTCATTTTTGGACCACTACAAATTTTGATAGACATTTTCATACGGGGTATCATTAAGTAGATTGAGAATCATTTGAGCAACGGCAAGAAAATGTTATGTAAGCATAAGTTTTGTTAACGAAATTATATATTTTCTATTGCTAACATGTAGCTGGAGGAGAGCAGAAAAATATAATAGTCTAGAAGAAAATCGTGGCATTACATTTCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00544	63117	71677	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11808	ADE2	EC:4.1.1.21	Purine metabolism	map00230

Gene Ontology

biological_process
GO:0006189 'de novo' IMP biosynthetic process

molecular_function GO:0005524 ATP binding GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000544s00017428.3	PF02222.17	ATP-grasp	5	75	2.40E-25
Glyur000544s00017428.3	PF00731.15	AIRC	183	342	2.30E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.064
SRR1783600	control	9.980
SRR1783602	moderate drought stress	9.355
SRR1811619	moderate drought stress	9.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.058
DRR006520	Root Summer glycyrrhizin high producing strain	11.821
DRR006521	Root Winter glycyrrhizin high producing strain	5.734
DRR006522	Root Winter glycyrrhizin high producing strain	5.641
DRR006523	Root Summer glycyrrhizin low producing strain	8.950
DRR006524	Root Summer glycyrrhizin low producing strain	9.006
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.154

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	19.292
SRR2868004	Drought Stress(Tissue:root)	14.390
SRR2967015	Control (Tissue:root)	14.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.608
SRR9715740	Leave	23.500
SRR9715741	Leave	28.443
SRR9715739	Root	3.526
SRR9715742	Root	14.264
SRR9715743	Root	11.843

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.764
SRR8749028	MeJA induced 9h	7.798
SRR8749029	MeJA induced 9h	6.496
SRR8749030	Uninduced	5.296
SRR8749031	Uninduced	2.313
SRR8749032	Uninduced	2.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.498
SRR8400027	Control-Root	15.272