Gene detail information of Glyur000545s00023412.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G17760.20glutamate decarboxylase 5
NRXP_003548319.10PREDICTED: glutamate decarboxylase-like [Glycine max]
COGYP_004290634.13.00E-176glutamate decarboxylase [Methanobacterium sp. AL-21]
Swissprottr|P54767|DCE_SOLLC0Glutamate decarboxylase
trEMBLtr|I1MQM4|I1MQM4_SOYBN0Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005456256467311+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD EC:4.1.1.15 Butanoate metabolism map00650
Alanine, aspartate and glutamate metabolismmap00250
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727
Type I diabetes mellitusmap04940


Gene Ontology

biological_process

GO:0006536  glutamate metabolic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004351  glutamate decarboxylase activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000545s00023412.1PF00282.14Pyridoxal_deC363841.20E-97


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control51.204
SRR1783600control51.884
SRR1783602moderate drought stress69.104
SRR1811619moderate drought stress67.763

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain152.403
DRR006520Root Summer glycyrrhizin high producing strain150.150
DRR006521Root Winter glycyrrhizin high producing strain303.639
DRR006522Root Winter glycyrrhizin high producing strain295.289
DRR006523Root Summer glycyrrhizin low producing strain81.096
DRR006524Root Summer glycyrrhizin low producing strain81.439
DRR006525Leaf Summer glycyrrhizin high producing strain43.159
DRR006526Leaf Summer glycyrrhizin high producing strain43.254

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.045
SRR2868004Drought Stress(Tissue:root)20.393
SRR2967015Control (Tissue:root)34.337

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.274
SRR9715740Leave70.270
SRR9715741Leave29.577
SRR9715739Root52.897
SRR9715742Root83.311
SRR9715743Root83.300

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.093
SRR8749028MeJA induced 9h15.043
SRR8749029MeJA induced 9h19.010
SRR8749030Uninduced2.348
SRR8749031Uninduced0.699
SRR8749032Uninduced2.018

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root87.943
SRR8400027Control-Root84.028

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved