Gene detail information of Glyur000545s00023415.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G22110.1 | 0 | DNA polymerase epsilon subunit B2 |
NR | XP_003548321.1 | 0 | PREDICTED: DNA polymerase epsilon subunit 2-like [Glycine max] |
trEMBL | tr|A0A067DVL2|A0A067DVL2_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO42631.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00545 | 80564 | 86359 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000545s00023415.1 | PF12213.3 | Dpoe2NT | 4 | 70 | 1.10E-05 |
Glyur000545s00023415.1 | PF04042.11 | DNA_pol_E_B | 251 | 454 | 3.20E-39 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 2.875 |
SRR1783600 | control | 2.988 |
SRR1783602 | moderate drought stress | 1.620 |
SRR1811619 | moderate drought stress | 1.687 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 2.183 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 2.218 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.509 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.615 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.295 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 1.208 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.808 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.740 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 7.387 |
SRR2868004 | Drought Stress(Tissue:root) | 3.889 |
SRR2967015 | Control (Tissue:root) | 3.468 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 1.886 |
SRR9715740 | Leave | 0.478 |
SRR9715741 | Leave | 0.647 |
SRR9715739 | Root | 0.284 |
SRR9715742 | Root | 1.206 |
SRR9715743 | Root | 0.937 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.025 |
SRR8749028 | MeJA induced 9h | 9.424 |
SRR8749029 | MeJA induced 9h | 6.880 |
SRR8749030 | Uninduced | 3.583 |
SRR8749031 | Uninduced | 3.118 |
SRR8749032 | Uninduced | 1.414 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 7.113 |
SRR8400027 | Control-Root | 5.453 |