Gene detail information of Glyur000545s00023415.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22110.10DNA polymerase epsilon subunit B2
NRXP_003548321.10PREDICTED: DNA polymerase epsilon subunit 2-like [Glycine max]
trEMBLtr|A0A067DVL2|A0A067DVL2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO42631.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005458056486359+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02325POLE2 EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030
Base excision repairmap03410
Nucleotide excision repairmap03420
HTLV-I infectionmap05166


Gene Ontology

biological_process

GO:0006260  DNA replication


molecular_function

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000545s00023415.1PF12213.3Dpoe2NT4701.10E-05
Glyur000545s00023415.1PF04042.11DNA_pol_E_B2514543.20E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.875
SRR1783600control2.988
SRR1783602moderate drought stress1.620
SRR1811619moderate drought stress1.687

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.183
DRR006520Root Summer glycyrrhizin high producing strain2.218
DRR006521Root Winter glycyrrhizin high producing strain0.509
DRR006522Root Winter glycyrrhizin high producing strain0.615
DRR006523Root Summer glycyrrhizin low producing strain1.295
DRR006524Root Summer glycyrrhizin low producing strain1.208
DRR006525Leaf Summer glycyrrhizin high producing strain0.808
DRR006526Leaf Summer glycyrrhizin high producing strain0.740

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.387
SRR2868004Drought Stress(Tissue:root)3.889
SRR2967015Control (Tissue:root)3.468

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.886
SRR9715740Leave0.478
SRR9715741Leave0.647
SRR9715739Root0.284
SRR9715742Root1.206
SRR9715743Root0.937

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.025
SRR8749028MeJA induced 9h9.424
SRR8749029MeJA induced 9h6.880
SRR8749030Uninduced3.583
SRR8749031Uninduced3.118
SRR8749032Uninduced1.414

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.113
SRR8400027Control-Root5.453

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved