Gene detail information of Glyur000548s00021022.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23420.1 | 6.00E-51 | Plant-specific transcription factor YABBY family protein |
| NR | XP_003613209.1 | 1.21E-147 | Axial regulator YABBY [Medicago truncatula] |
| Swissprot | tr|Q9LDT3|YAB4_ARATH | 4.00E-71 | Axial regulator YABBY 4 |
| trEMBL | tr|G7K086|G7K086_MEDTR | 5.00E-148 | YABBY transcription factor {ECO:0000313|EMBL:AES96167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00548 | 34943 | 37295 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-YABBY |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000548s00021022.1 | PF04690.8 | YABBY | 6 | 165 | 6.70E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.067 |
| SRR1783600 | control | 8.967 |
| SRR1783602 | moderate drought stress | 6.280 |
| SRR1811619 | moderate drought stress | 6.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.118 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.195 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.143 |
| SRR9715740 | Leave | 3.723 |
| SRR9715741 | Leave | 0.802 |
| SRR9715739 | Root | 0.482 |
| SRR9715742 | Root | 0.870 |
| SRR9715743 | Root | 0.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.002 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.108 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.027 |
| SRR8400027 | Control-Root | 2.745 |