Gene detail information of Glyur000548s00021030.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60590.1 | 0 | Pectin lyase-like superfamily protein |
| NR | AES96173.2 | 0 | polygalacturonase [Medicago truncatula] |
| COG | NP_693009.1 | 4.00E-29 | hypothetical protein OB2088 [Oceanobacillus iheyensis HTE831] |
| Swissprot | tr|Q949Z1|PGLR4_ARATH | 8.00E-120 | Polygalacturonase At1g48100 (Precursor) |
| trEMBL | tr|G7K092|G7K092_MEDTR | 0 | Polygalacturonase {ECO:0000313|EMBL:AES96173.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00548 | 75076 | 81108 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000548s00021030.1 | PF00295.12 | Glyco_hydro_28 | 158 | 240 | 5.60E-11 |
| Glyur000548s00021030.1 | PF00295.12 | Glyco_hydro_28 | 275 | 493 | 2.60E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.324 |
| SRR1783600 | control | 13.424 |
| SRR1783602 | moderate drought stress | 2.040 |
| SRR1811619 | moderate drought stress | 1.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.819 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.343 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.018 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.267 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.346 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.932 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.984 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.981 |
| SRR2967015 | Control (Tissue:root) | 2.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.375 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.716 |
| SRR9715739 | Root | 1.922 |
| SRR9715742 | Root | 1.907 |
| SRR9715743 | Root | 1.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.037 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.013 |
| SRR8749030 | Uninduced | 0.051 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 82.999 |
| SRR8400027 | Control-Root | 78.099 |