Gene detail information of Glyur000549s00029259.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55020.11.00E-61lipoxygenase 1
NRXP_003626860.10Lipoxygenase [Medicago truncatula]
Swissprottr|Q06327|LOX1_ARATH1.00E-68Linoleate 9S-lipoxygenase 1
trEMBLtr|G7LEB2|G7LEB2_MEDTR0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005496006862109+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000549s00029259.1PF01477.18PLAT661566.00E-10
Glyur000549s00029259.1PF00305.14Lipoxygenase1683588.60E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.052
SRR1783600control0.187
SRR1783602moderate drought stress0.140
SRR1811619moderate drought stress0.162

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.277
DRR006520Root Summer glycyrrhizin high producing strain0.565
DRR006521Root Winter glycyrrhizin high producing strain0.372
DRR006522Root Winter glycyrrhizin high producing strain0.492
DRR006523Root Summer glycyrrhizin low producing strain0.093
DRR006524Root Summer glycyrrhizin low producing strain0.230
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.622
SRR2868004Drought Stress(Tissue:root)0.925
SRR2967015Control (Tissue:root)0.609

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.000
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.159
SRR9715743Root0.249

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.070
SRR8749029MeJA induced 9h0.075
SRR8749030Uninduced0.044
SRR8749031Uninduced0.129
SRR8749032Uninduced0.094

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.248
SRR8400027Control-Root0.170

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved