Gene detail information of Glyur000549s00029260.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.12.00E-69PLAT/LH2 domain-containing lipoxygenase family protein
NRKHN22174.13.72E-126Linoleate 9S-lipoxygenase 5, chloroplastic [Glycine soja]
Swissprottr|Q9LUW0|LOX5_ARATH7.00E-80Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBLtr|A0A072UA69|A0A072UA69_MEDTR1.00E-125Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005496298964594+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000549s00029260.1PF00305.14Lipoxygenase12134.90E-76


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.081
SRR1783600control0.120
SRR1783602moderate drought stress0.171
SRR1811619moderate drought stress0.203

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.678
DRR006520Root Summer glycyrrhizin high producing strain0.853
DRR006521Root Winter glycyrrhizin high producing strain0.173
DRR006522Root Winter glycyrrhizin high producing strain0.330
DRR006523Root Summer glycyrrhizin low producing strain0.512
DRR006524Root Summer glycyrrhizin low producing strain0.142
DRR006525Leaf Summer glycyrrhizin high producing strain0.072
DRR006526Leaf Summer glycyrrhizin high producing strain0.132

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.296
SRR2868004Drought Stress(Tissue:root)0.598
SRR2967015Control (Tissue:root)0.238

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.118
SRR9715740Leave0.000
SRR9715741Leave0.025
SRR9715739Root0.000
SRR9715742Root0.047
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.179
SRR8749028MeJA induced 9h0.377
SRR8749029MeJA induced 9h0.439
SRR8749030Uninduced0.363
SRR8749031Uninduced0.345
SRR8749032Uninduced0.129

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.104
SRR8400027Control-Root0.145

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved