Gene detail information of Glyur000549s00029265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29940.1 | 2.00E-130 | pathogenesis related homeodomain protein A |
| NR | XP_004487993.1 | 0 | PREDICTED: pathogenesis-related homeodomain protein-like [Cicer arietinum] |
| Swissprot | tr|P48785|PRH_ARATH | 4.00E-155 | Pathogenesis-related homeodomain protein |
| trEMBL | tr|K7MBU3|K7MBU3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G17956.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00549 | 111343 | 116333 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000549s00029265.1 | PF00628.24 | PHD | 235 | 290 | 1.80E-10 |
| Glyur000549s00029265.1 | PF00046.24 | Homeobox | 490 | 535 | 2.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.793 |
| SRR1783600 | control | 4.787 |
| SRR1783602 | moderate drought stress | 4.799 |
| SRR1811619 | moderate drought stress | 4.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.130 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.418 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.719 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.548 |
| SRR2967015 | Control (Tissue:root) | 10.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.856 |
| SRR9715740 | Leave | 5.366 |
| SRR9715741 | Leave | 4.733 |
| SRR9715739 | Root | 0.053 |
| SRR9715742 | Root | 3.007 |
| SRR9715743 | Root | 1.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.529 |
| SRR8749028 | MeJA induced 9h | 7.816 |
| SRR8749029 | MeJA induced 9h | 3.638 |
| SRR8749030 | Uninduced | 4.197 |
| SRR8749031 | Uninduced | 1.986 |
| SRR8749032 | Uninduced | 2.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.026 |
| SRR8400027 | Control-Root | 9.800 |