Gene detail

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Gene detail information of Glyur000550s00021749.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36710.1	1.00E-122	Pectin lyase-like superfamily protein
NR	XP_004494018.1	0	PREDICTED: probable pectinesterase 15-like [Cicer arietinum]
COG	YP_003404589.1	3.00E-60	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q9ZQA3\|PME15_ARATH	3.00E-150	Probable pectinesterase 15 (Precursor)
trEMBL	tr\|I1NAE9\|I1NAE9_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000550s00021749.1
ATGAGATTCAACAGATCCCTCTTTTGGCTTTCTGGCTTTGTCATTTTCATCTTTTCCTTCATAATTGTTCATTTCACCACGCCACCTAATTCCCCCACCGCTGACACTGCCATTAGTGATCCTCAAGGTAGTTTGATCAGTTTTCAGCTTGGCATATTGAGCAAGATTATAAATCTGAGTGGGGCTCAAGACTTTGTGTCTTTGGTAACAAGTATTGTTGCGAGTAGGAGACATCATCATCACAGGAAGAGGCATAAGGAAAAATGTGACAAGTCCAAATGGGCTTCCAGGCTAATCTCAGACTACAATGTGACCCTTGTTCTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAGAAAGCAGTTGACGCTGTTCCTGAATCGAGTTCTGATACCACTCTTATCATAGTCGATTCTGGTATATACAGGGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACCTGATACTTGAAGGTCAAGGGTATCTTAATACAATCATAGAATGGAACGACACCGCGAATTCCACTGGTGGGACTTCCTATAGCTACTCCTTTGCCGTCTTTGCTTCTAAATTCACTGCTTACAACATCAGCTTCAAGAACACGGCTCGTCCGGCATCACCGGGAGAGGTTGGGGCACAGGCAGTGGCACTGAGAGTGACAGGGGATCAAGGCGCATTCTATGGGTGTGGCTTTTATGGTGCACAGGACACTCTCAATGATGACAGTGGGAGACACTATTTTAAAGACTGTTTCATCCAAGGTTCCATTGATTTCATTTTTGGCAATGCTAGATCACTTTATGAGAATTGTACCATAAACTCTATAGCAGCAAAAGAAGAAGTGGTTGGGGTTGGGGGGTCGATCACAGCACAAGGGANGCAATCGATGAAGGAAGCAACAGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGAAGTGGGAAAGTGTGGCTTGGAAGAGCATGGGGAGCGTATGCCACTGTGGTTTTCTCAACAACATACATGTCTGATGTTGTTGCTGCTGATGGATGGAACGATTGGAAAGATCCCTCTAGAGACCAGAGCGTCTTCTTTGGNGAGTACCGTTGTATGGGACCTGGAGCGAATTATACATCCAGAGTCTCTTATGCCAAGCAACTCACGGATTACCAAGCAATCTCCTACATGAATGTTTCTTACATTGATGGGAATGATTGGCTTCTTAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00550	41334	43420	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000550s00021749.1	PF01095.14	Pectinesterase	109	400	1.90E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.280
SRR1783600	control	0.215
SRR1783602	moderate drought stress	0.234
SRR1811619	moderate drought stress	0.231

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.307
DRR006520	Root Summer glycyrrhizin high producing strain	0.268
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.633
DRR006524	Root Summer glycyrrhizin low producing strain	0.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.736
SRR2868004	Drought Stress(Tissue:root)	1.583
SRR2967015	Control (Tissue:root)	0.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.027
SRR9715740	Leave	0.052
SRR9715741	Leave	0.129
SRR9715739	Root	0.231
SRR9715742	Root	0.833
SRR9715743	Root	0.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.002
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.101
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.178
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.810
SRR8400027	Control-Root	1.956