Gene detail information of Glyur000550s00021750.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36720.11.00E-180Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
NRXP_006604599.10PREDICTED: uncharacterized protein LOC100802562 [Glycine max]
Swissprottr|F4KBP5|CHR4_ARATH7.00E-06Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|K7MZ48|K7MZ48_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37190.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005504710057425-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000550s00021750.1PF00628.24PHD5025434.90E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.688
SRR1783600control9.850
SRR1783602moderate drought stress14.139
SRR1811619moderate drought stress12.863

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.806
DRR006520Root Summer glycyrrhizin high producing strain12.440
DRR006521Root Winter glycyrrhizin high producing strain5.165
DRR006522Root Winter glycyrrhizin high producing strain5.089
DRR006523Root Summer glycyrrhizin low producing strain12.365
DRR006524Root Summer glycyrrhizin low producing strain12.410
DRR006525Leaf Summer glycyrrhizin high producing strain10.842
DRR006526Leaf Summer glycyrrhizin high producing strain10.696

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.417
SRR2868004Drought Stress(Tissue:root)20.591
SRR2967015Control (Tissue:root)26.161

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.574
SRR9715740Leave24.515
SRR9715741Leave23.542
SRR9715739Root3.409
SRR9715742Root14.104
SRR9715743Root13.061

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.152
SRR8749028MeJA induced 9h8.734
SRR8749029MeJA induced 9h3.708
SRR8749030Uninduced3.192
SRR8749031Uninduced1.344
SRR8749032Uninduced1.890

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.014
SRR8400027Control-Root17.652

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved