Gene detail information of Glyur000550s00021750.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36720.1 | 1.00E-180 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain |
| NR | XP_006604599.1 | 0 | PREDICTED: uncharacterized protein LOC100802562 [Glycine max] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 7.00E-06 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7MZ48|K7MZ48_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37190.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00550 | 47100 | 57425 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.688 |
| SRR1783600 | control | 9.850 |
| SRR1783602 | moderate drought stress | 14.139 |
| SRR1811619 | moderate drought stress | 12.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.806 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.165 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.365 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.842 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.417 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.591 |
| SRR2967015 | Control (Tissue:root) | 26.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.574 |
| SRR9715740 | Leave | 24.515 |
| SRR9715741 | Leave | 23.542 |
| SRR9715739 | Root | 3.409 |
| SRR9715742 | Root | 14.104 |
| SRR9715743 | Root | 13.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.152 |
| SRR8749028 | MeJA induced 9h | 8.734 |
| SRR8749029 | MeJA induced 9h | 3.708 |
| SRR8749030 | Uninduced | 3.192 |
| SRR8749031 | Uninduced | 1.344 |
| SRR8749032 | Uninduced | 1.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.014 |
| SRR8400027 | Control-Root | 17.652 |