Gene detail information of Glyur000552s00024339.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G28420.10homeobox-1
NRXP_006583835.10PREDICTED: uncharacterized protein LOC100818817 isoform X2 [Glycine max]
trEMBLtr|K7L2S8|K7L2S8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G32180.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005525304463417-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB
EAR motif-containing ProteinsHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000552s00024339.1PF00046.24Homeobox491041.10E-15
Glyur000552s00024339.1PF02791.12DDT5636211.10E-25
Glyur000552s00024339.1PF05066.8HARE-HTH7458136.10E-11
Glyur000552s00024339.1PF15612.1WHIM19529978.50E-05
Glyur000552s00024339.1PF15613.1WHIM2112911651.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.572
SRR1783600control20.708
SRR1783602moderate drought stress21.458
SRR1811619moderate drought stress21.228

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.181
DRR006520Root Summer glycyrrhizin high producing strain18.075
DRR006521Root Winter glycyrrhizin high producing strain12.605
DRR006522Root Winter glycyrrhizin high producing strain12.132
DRR006523Root Summer glycyrrhizin low producing strain22.239
DRR006524Root Summer glycyrrhizin low producing strain22.042
DRR006525Leaf Summer glycyrrhizin high producing strain18.969
DRR006526Leaf Summer glycyrrhizin high producing strain18.956

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.495
SRR2868004Drought Stress(Tissue:root)45.241
SRR2967015Control (Tissue:root)47.964

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.872
SRR9715740Leave26.625
SRR9715741Leave26.371
SRR9715739Root2.584
SRR9715742Root26.202
SRR9715743Root22.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.376
SRR8749028MeJA induced 9h23.241
SRR8749029MeJA induced 9h11.771
SRR8749030Uninduced20.242
SRR8749031Uninduced17.983
SRR8749032Uninduced10.995

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.066
SRR8400027Control-Root34.471

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved