Gene detail information of Glyur000552s00024355.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47500.1 | 7.00E-50 | cycling DOF factor 3 |
| NR | KHN34636.1 | 0 | Dof zinc finger protein DOF5.2 [Glycine soja] |
| Swissprot | tr|Q8LFV3|CDF3_ARATH | 3.00E-63 | Cyclic dof factor 3 |
| trEMBL | tr|K7MXY4|K7MXY4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00552 | 143905 | 146457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000552s00024355.1 | PF02701.10 | zf-Dof | 100 | 159 | 8.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.929 |
| SRR1783600 | control | 0.982 |
| SRR1783602 | moderate drought stress | 0.612 |
| SRR1811619 | moderate drought stress | 0.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.296 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.145 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.947 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.186 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.473 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.477 |
| SRR2967015 | Control (Tissue:root) | 6.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.391 |
| SRR9715740 | Leave | 0.571 |
| SRR9715741 | Leave | 0.554 |
| SRR9715739 | Root | 0.041 |
| SRR9715742 | Root | 0.681 |
| SRR9715743 | Root | 0.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.073 |
| SRR8400027 | Control-Root | 4.736 |