Gene detail information of Glyur000553s00020400.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20823.1 | 2.00E-31 | RING/U-box superfamily protein |
| NR | XP_007135973.1 | 1.08E-96 | hypothetical protein PHAVU_009G007400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LM69|ATL80_ARATH | 9.00E-64 | RING-H2 finger protein ATL80 |
| trEMBL | tr|V7AQN7|V7AQN7_PHAVU | 4.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:ESW07967.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00553 | 91479 | 92057 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000553s00020400.1 | PF13639.1 | zf-RING_2 | 101 | 144 | 1.50E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.148 |
| SRR1783600 | control | 75.967 |
| SRR1783602 | moderate drought stress | 66.327 |
| SRR1811619 | moderate drought stress | 66.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 60.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.219 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.515 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.027 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.223 |
| SRR2967015 | Control (Tissue:root) | 22.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 30.610 |
| SRR9715740 | Leave | 37.695 |
| SRR9715741 | Leave | 40.354 |
| SRR9715739 | Root | 49.628 |
| SRR9715742 | Root | 55.513 |
| SRR9715743 | Root | 55.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.651 |
| SRR8749028 | MeJA induced 9h | 45.017 |
| SRR8749029 | MeJA induced 9h | 15.599 |
| SRR8749030 | Uninduced | 3.096 |
| SRR8749031 | Uninduced | 0.530 |
| SRR8749032 | Uninduced | 3.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 56.647 |
| SRR8400027 | Control-Root | 47.619 |