Gene detail information of Glyur000553s00020408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G42970.10glyceraldehyde-3-phosphate dehydrogenase B subunit
NRXP_004500847.10PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Cicer arietinum]
COGYP_001657517.16.00E-165glyceraldehyde-3-phosphate dehydrogenase [Microcystis aeruginosa NIES-843]
Swissprottr|P12859|G3PB_PEA0Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Precursor)
trEMBLtr|M5WF88|M5WF88_PRUPE0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00553138389147129+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05298GAPA EC:1.2.1.13 Carbon metabolism map01200
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006006  glucose metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

GO:0050661  NADP binding

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000553s00020408.1PF00044.19Gp_dh_N882401.80E-52
Glyur000553s00020408.1PF02800.15Gp_dh_C2454024.30E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.437
SRR1783600control5.294
SRR1783602moderate drought stress6.492
SRR1811619moderate drought stress6.246

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.343
DRR006520Root Summer glycyrrhizin high producing strain8.433
DRR006521Root Winter glycyrrhizin high producing strain6.190
DRR006522Root Winter glycyrrhizin high producing strain6.062
DRR006523Root Summer glycyrrhizin low producing strain9.490
DRR006524Root Summer glycyrrhizin low producing strain9.655
DRR006525Leaf Summer glycyrrhizin high producing strain394.190
DRR006526Leaf Summer glycyrrhizin high producing strain392.391

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.530
SRR2868004Drought Stress(Tissue:root)18.837
SRR2967015Control (Tissue:root)15.112

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave329.691
SRR9715740Leave378.613
SRR9715741Leave270.507
SRR9715739Root7.315
SRR9715742Root14.403
SRR9715743Root13.004

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.051
SRR8749028MeJA induced 9h10.032
SRR8749029MeJA induced 9h6.134
SRR8749030Uninduced7.377
SRR8749031Uninduced4.560
SRR8749032Uninduced5.490

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.008
SRR8400027Control-Root11.294

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved