Gene detail information of Glyur000555s00023334.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18180.1 | 1.00E-70 | Pectin lyase-like superfamily protein |
| NR | XP_004487822.1 | 0 | PREDICTED: polygalacturonase-like [Cicer arietinum] |
| COG | YP_003391696.1 | 1.00E-18 | glycoside hydrolase family 28 [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q39786|PGLR_GOSHI | 9.00E-94 | Polygalacturonase (Precursor) |
| trEMBL | tr|K7MBH0|K7MBH0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16240.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00555 | 10607 | 14603 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01213 | E3.2.1.67 | EC:3.2.1.67 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000555s00023334.1 | PF00295.12 | Glyco_hydro_28 | 79 | 153 | 8.60E-10 |
| Glyur000555s00023334.1 | PF00295.12 | Glyco_hydro_28 | 157 | 367 | 1.20E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.002 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.096 |
| SRR1811619 | moderate drought stress | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.572 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.782 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.512 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.051 |
| SRR2967015 | Control (Tissue:root) | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.370 |
| SRR9715740 | Leave | 0.933 |
| SRR9715741 | Leave | 0.230 |
| SRR9715739 | Root | 0.001 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.031 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.011 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.034 |
| SRR8400027 | Control-Root | 0.026 |