Gene detail information of Glyur000555s00023345.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G63280.20NIMA-related kinase 4
NRKEH23812.10Serine/Threonine-kinase Nek4 [Medicago truncatula]
COGYP_006527485.11.00E-27serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprottr|Q2QMH1|NEK2_ORYSJ0Serine/threonine-protein kinase Nek2
trEMBLtr|A0A072U282|A0A072U282_MEDTR0Serine/Threonine-kinase Nek4 {ECO:0000313|EMBL:KEH23812.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00555100120105705+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.1.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000555s00023345.1PF00069.20Pkinase683211.30E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.736
SRR1783600control26.637
SRR1783602moderate drought stress30.439
SRR1811619moderate drought stress30.624

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.497
DRR006520Root Summer glycyrrhizin high producing strain37.178
DRR006521Root Winter glycyrrhizin high producing strain6.050
DRR006522Root Winter glycyrrhizin high producing strain5.782
DRR006523Root Summer glycyrrhizin low producing strain49.964
DRR006524Root Summer glycyrrhizin low producing strain50.704
DRR006525Leaf Summer glycyrrhizin high producing strain10.173
DRR006526Leaf Summer glycyrrhizin high producing strain9.959

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.505
SRR2868004Drought Stress(Tissue:root)34.459
SRR2967015Control (Tissue:root)33.132

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.671
SRR9715740Leave8.049
SRR9715741Leave7.439
SRR9715739Root14.112
SRR9715742Root24.987
SRR9715743Root22.235

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.532
SRR8749028MeJA induced 9h17.764
SRR8749029MeJA induced 9h9.840
SRR8749030Uninduced4.505
SRR8749031Uninduced3.105
SRR8749032Uninduced2.717

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.119
SRR8400027Control-Root52.624

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved