Gene detail information of Glyur000556s00025900.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05577.1 | 4.00E-28 | Domain of unknown function (DUF966) |
| NR | AES66081.2 | 0 | DUF966 domain protein [Medicago truncatula] |
| Swissprot | tr|Q9LX14|UFC_ARATH | 1.00E-14 | Protein UPSTREAM OF FLC |
| trEMBL | tr|G7IQN5|G7IQN5_MEDTR | 0 | DUF966 domain protein {ECO:0000313|EMBL:AES66081.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00556 | 51411 | 54506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000556s00025900.1 | PF06136.8 | DUF966 | 32 | 320 | 4.00E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 0.028 |
| SRR1811619 | moderate drought stress | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.014 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.082 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.438 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.902 |
| SRR2967015 | Control (Tissue:root) | 1.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.050 |
| SRR9715740 | Leave | 0.024 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.039 |
| SRR8749028 | MeJA induced 9h | 0.010 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.463 |
| SRR8400027 | Control-Root | 0.187 |