Gene detail information of Glyur000556s00025909.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32230.1 | 6.00E-78 | proteinaceous RNase P 1 |
| NR | XP_004485760.1 | 0 | PREDICTED: proteinaceous RNase P 2-like [Cicer arietinum] |
| Swissprot | tr|Q680B9|PRRP2_ARATH | 9.00E-175 | Proteinaceous RNase P 2 |
| trEMBL | tr|I1LTU0|I1LTU0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00556 | 109413 | 114681 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18213 | PRORP | EC:3.1.26.5 | RNA transport | map03013 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000556s00025909.1 | PF13812.1 | PPR_3 | 142 | 172 | 0.27 |
| Glyur000556s00025909.1 | PF11977.3 | RNase_Zc3h12a | 294 | 399 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.736 |
| SRR1783600 | control | 10.820 |
| SRR1783602 | moderate drought stress | 11.396 |
| SRR1811619 | moderate drought stress | 11.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.239 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.799 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.538 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.867 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.883 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.928 |
| SRR2967015 | Control (Tissue:root) | 26.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.821 |
| SRR9715740 | Leave | 11.536 |
| SRR9715741 | Leave | 15.980 |
| SRR9715739 | Root | 10.501 |
| SRR9715742 | Root | 14.829 |
| SRR9715743 | Root | 14.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.368 |
| SRR8749028 | MeJA induced 9h | 25.709 |
| SRR8749029 | MeJA induced 9h | 11.063 |
| SRR8749030 | Uninduced | 10.973 |
| SRR8749031 | Uninduced | 8.872 |
| SRR8749032 | Uninduced | 7.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.908 |
| SRR8400027 | Control-Root | 31.190 |