Gene detail information of Glyur000556s00025914.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
NRXP_006345885.11.42E-11PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Solanum tuberosum]
Swissprottr|Q9FPT1|UBP12_ARATH6.00E-06Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|K4D4P5|K4D4P5_SOLLC2.00E-11Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00556133024135147-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.549
SRR1783600control11.531
SRR1783602moderate drought stress15.056
SRR1811619moderate drought stress13.535

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.151
DRR006520Root Summer glycyrrhizin high producing strain8.858
DRR006521Root Winter glycyrrhizin high producing strain14.024
DRR006522Root Winter glycyrrhizin high producing strain16.472
DRR006523Root Summer glycyrrhizin low producing strain5.521
DRR006524Root Summer glycyrrhizin low producing strain8.555
DRR006525Leaf Summer glycyrrhizin high producing strain6.265
DRR006526Leaf Summer glycyrrhizin high producing strain5.973

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.775
SRR2868004Drought Stress(Tissue:root)15.234
SRR2967015Control (Tissue:root)17.206

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.281
SRR9715740Leave27.751
SRR9715741Leave27.022
SRR9715739Root4.001
SRR9715742Root6.869
SRR9715743Root7.760

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.382
SRR8749028MeJA induced 9h27.909
SRR8749029MeJA induced 9h28.022
SRR8749030Uninduced27.402
SRR8749031Uninduced18.821
SRR8749032Uninduced23.064

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.392
SRR8400027Control-Root60.485

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved