Gene detail

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Gene detail information of Glyur000557s00018774.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30580.1	2.00E-31	DREB2A-interacting protein 2
NR	XP_004495463.1	1.38E-160	PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cicer arietinum]
Swissprot	tr\|Q94AY3\|DRIP2_ARATH	2.00E-72	E3 ubiquitin protein ligase DRIP2
trEMBL	tr\|I1LC47\|I1LC47_SOYBN	1.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G32360.1}

Sequence

Transcript Sequence

>Glyur000557s00018774.1
ATGACAAAGGAGAAGGTCAATAGGGCGAAGGTCTCGGCATGCTTCACGTGTCTTTTGTGTAATAAATTCTTCAGAAACGCCACCACCATTTCAGAATGCTTGCATACTTTTTGCAGGGAATGTATAGAGAAGAAGCTGATAAATGAGAAATTAAATCACTGTCCAGTATGCAAGACAGACTTGGGTTGTTCTCCATTAGATAAATTGAGGGCAGATCATGGTCTGCAAGATTTGAGGGAGAAAGTTTTNCCCATTGAAGTAAAAAGTGCCAAGACAACTAAATATGTTCCTTTAAATACATTGCCAAGGCCAACCAAAAGAAAGAAGAATTCTCCATCTTCATTAAAAAACAATGCAAGAAGAGCCAAAGCTGATGCTAGAAATGTCATCACTCCACAAGAACCAAAATTGCCTGCTCCTGAACCCAATGTAGTGGCAGAAGTTAAGAGAGAGGGAAAACCCCGTGAGGTAGAAATTTTGGATGAAGTTCCTACCATTCAATCTGCGAGAAGAGCAAAAGCTGCAGCAAGAAGAAAATTCATTCTAATTGAATCAACTCCTACTTGTCAACCTGACAAAGACAAAGTAACAGGAGATGAAAAGAAAGATGATGATGAGCTCCCCCAGATTGAAACTTCCAGTGAGACTTCCAAAACCAGAATTCAGAATTCTTCTAGACCAGAATCAAGTCAGCAAATAGTGCCCAACATTAATATTTCAGGGAGCAGTGCTAAGTTATGGAAAGAGAAGGGTGATGTGTGTGAGCCATTGAATTGNCTGGTGGAAGCTACAAACAGAAACAGGCCTCGGAATAACTCCACCATGCAAGAGAATGTTGTCATTCCAGTGCTTGTGGACTCTAGTGACAGTGACTCCAAGGTGCCTAAGGTCCAAGTCAAGAAACATTGTCACCAAACAGCAGCAGCAGCAGCCTGTGATCAAAATGAATCTACTACTCCAAAACTAGATTCCTTCAAGCTTAAAATGATGGACAACCCCCAAGAGAAAAGAGTCAAATTTTCTGGGGACTTGAATCTTCCAGCAGAACCTGTGATTAGTCCAGAGAATGAAAGCAACAAAAGATTTGGTCCAATCTGGTTCTCCTTGGTTGCTTCTGAACAGAAGGAAGTAGGTGCACCATTGCCACAAATATCTTCCTGCTACCTAAGGGTCATGGATGGCAGTTTACCTGTTTCCTATATCAAAAAGTATCTTGTGAAGAAGCTTGGTCTTGCTAGCGAAGCTGAGGTTGAAATCTCATTACGAGGCGAGCCAGTTTTATCTTCAATGCAACTTCAAAACTTAGTAGAGTGGTGGTTGCAAACAATGCCAATGAATGAGAGGATTCAGACATCTGTTGNAAGCTCAGCTAAGGATTTTGTAATGGTCCTTTCATACTGTCGAAAGGCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	1311	5610	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018774.1	PF13923.1	zf-C3HC4_2	17	57	4.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.026
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.027
DRR006520	Root Summer glycyrrhizin high producing strain	0.037
DRR006521	Root Winter glycyrrhizin high producing strain	0.120
DRR006522	Root Winter glycyrrhizin high producing strain	0.142
DRR006523	Root Summer glycyrrhizin low producing strain	0.202
DRR006524	Root Summer glycyrrhizin low producing strain	0.014
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.571
SRR2868004	Drought Stress(Tissue:root)	0.884
SRR2967015	Control (Tissue:root)	0.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.013
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.013
SRR9715743	Root	0.033

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.151
SRR8749028	MeJA induced 9h	1.228
SRR8749029	MeJA induced 9h	1.705
SRR8749030	Uninduced	0.429
SRR8749031	Uninduced	16.681
SRR8749032	Uninduced	13.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.163
SRR8400027	Control-Root	0.067