Gene detail information of Glyur000557s00018784.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43330.12.00E-163Lactate/malate dehydrogenase family protein
NRXP_004495378.10PREDICTED: malate dehydrogenase, cytoplasmic-like [Cicer arietinum]
COGYP_001002408.18.00E-114malate dehydrogenase [Halorhodospira halophila SL1]
Swissprottr|O48905|MDHC_MEDSA0Malate dehydrogenase, cytoplasmic
trEMBLtr|I3SCX2|I3SCX2_LOTJA0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005574999453784-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00025MDH1 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000557s00018784.1PF00056.18Ldh_1_N71624.00E-27
Glyur000557s00018784.1PF02866.13Ldh_1_C1663341.40E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.048
SRR1783600control52.818
SRR1783602moderate drought stress31.664
SRR1811619moderate drought stress31.033

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.516
DRR006520Root Summer glycyrrhizin high producing strain32.881
DRR006521Root Winter glycyrrhizin high producing strain4.192
DRR006522Root Winter glycyrrhizin high producing strain4.086
DRR006523Root Summer glycyrrhizin low producing strain30.606
DRR006524Root Summer glycyrrhizin low producing strain30.315
DRR006525Leaf Summer glycyrrhizin high producing strain31.685
DRR006526Leaf Summer glycyrrhizin high producing strain31.384

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)171.182
SRR2868004Drought Stress(Tissue:root)91.627
SRR2967015Control (Tissue:root)69.567

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave98.427
SRR9715740Leave103.346
SRR9715741Leave79.000
SRR9715739Root37.919
SRR9715742Root43.542
SRR9715743Root40.056

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.399
SRR8749028MeJA induced 9h30.020
SRR8749029MeJA induced 9h45.689
SRR8749030Uninduced2.023
SRR8749031Uninduced0.403
SRR8749032Uninduced2.267

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root94.758
SRR8400027Control-Root99.366

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved