Gene detail information of Glyur000557s00018787.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23280.22.00E-66XB3 ortholog 5 in Arabidopsis thaliana
NRKEH42762.10E3 ubiquitin-protein ligase XBAT35, putative [Medicago truncatula]
Swissprottr|Q4FE47|XB35_ARATH4.00E-118Putative E3 ubiquitin-protein ligase XBAT35
trEMBLtr|A0A072VLQ0|A0A072VLQ0_MEDTR0E3 ubiquitin-protein ligase XBAT35, putative {ECO:0000313|EMBL:KEH42762.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005576342468511+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000557s00018787.1PF13920.1zf-C3HC4_33123599.60E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.702
SRR1783600control48.861
SRR1783602moderate drought stress58.632
SRR1811619moderate drought stress58.614

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain88.721
DRR006520Root Summer glycyrrhizin high producing strain87.374
DRR006521Root Winter glycyrrhizin high producing strain63.278
DRR006522Root Winter glycyrrhizin high producing strain61.632
DRR006523Root Summer glycyrrhizin low producing strain112.096
DRR006524Root Summer glycyrrhizin low producing strain111.766
DRR006525Leaf Summer glycyrrhizin high producing strain27.091
DRR006526Leaf Summer glycyrrhizin high producing strain26.945

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.889
SRR2868004Drought Stress(Tissue:root)76.293
SRR2967015Control (Tissue:root)82.417

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave57.925
SRR9715740Leave55.673
SRR9715741Leave78.788
SRR9715739Root28.395
SRR9715742Root62.219
SRR9715743Root55.663

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.437
SRR8749028MeJA induced 9h92.961
SRR8749029MeJA induced 9h73.881
SRR8749030Uninduced34.946
SRR8749031Uninduced40.984
SRR8749032Uninduced38.022

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.996
SRR8400027Control-Root62.929

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved