Gene detail information of Glyur000558s00030272.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24320.15.00E-167Transducin/WD40 repeat-like superfamily protein
NRXP_003527990.10PREDICTED: WD repeat-containing protein 44-like [Glycine max]
COGYP_007121051.15.00E-28WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q6S7B0|TAF5_ARATH6.00E-13Transcription initiation factor TFIID subunit 5
trEMBLtr|I1KAV6|I1KAV6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0055897684103336-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000558s00030272.1PF00400.27WD402482792.50E-10
Glyur000558s00030272.1PF00400.27WD403473822.00E-09
Glyur000558s00030272.1PF00400.27WD403944241.60E-06
Glyur000558s00030272.1PF00400.27WD405345580.0017


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.559
SRR1783600control3.525
SRR1783602moderate drought stress2.497
SRR1811619moderate drought stress2.542

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.867
DRR006520Root Summer glycyrrhizin high producing strain2.786
DRR006521Root Winter glycyrrhizin high producing strain10.575
DRR006522Root Winter glycyrrhizin high producing strain10.366
DRR006523Root Summer glycyrrhizin low producing strain2.115
DRR006524Root Summer glycyrrhizin low producing strain1.961
DRR006525Leaf Summer glycyrrhizin high producing strain3.696
DRR006526Leaf Summer glycyrrhizin high producing strain3.594

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.853
SRR2868004Drought Stress(Tissue:root)17.093
SRR2967015Control (Tissue:root)12.356

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.549
SRR9715740Leave3.141
SRR9715741Leave2.066
SRR9715739Root0.915
SRR9715742Root5.390
SRR9715743Root4.278

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.305
SRR8749028MeJA induced 9h20.561
SRR8749029MeJA induced 9h2.946
SRR8749030Uninduced2.208
SRR8749031Uninduced0.444
SRR8749032Uninduced0.455

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.990
SRR8400027Control-Root11.103

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved