Gene detail information of Glyur000559s00020525.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12280.20retinoblastoma-related 1
NRXP_006598087.10PREDICTED: retinoblastoma-related protein 1-like [Glycine max]
Swissprottr|Q9SLZ4|RBR1_PEA0Retinoblastoma-related protein 1
trEMBLtr|I1MIM1|I1MIM1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G36890.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0055996309104368+


Gene family

Gene familysubfamily
Transcription Factors FamilyRB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006357  regulation of transcription from RNA polymerase II promoter

GO:0007049  cell cycle

GO:0051726  regulation of cell cycle


cellular_component

GO:0005634  nucleus


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000559s00020525.2PF11934.3DUF3452942346.70E-42
Glyur000559s00020525.2PF01858.12RB_A4166175.30E-77
Glyur000559s00020525.2PF01857.15RB_B7408732.10E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.551
SRR1783600control14.644
SRR1783602moderate drought stress14.499
SRR1811619moderate drought stress14.350

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.087
DRR006520Root Summer glycyrrhizin high producing strain15.827
DRR006521Root Winter glycyrrhizin high producing strain26.318
DRR006522Root Winter glycyrrhizin high producing strain25.911
DRR006523Root Summer glycyrrhizin low producing strain15.135
DRR006524Root Summer glycyrrhizin low producing strain15.171
DRR006525Leaf Summer glycyrrhizin high producing strain6.859
DRR006526Leaf Summer glycyrrhizin high producing strain6.869

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.821
SRR2868004Drought Stress(Tissue:root)19.599
SRR2967015Control (Tissue:root)21.699

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.636
SRR9715740Leave6.200
SRR9715741Leave7.021
SRR9715739Root5.122
SRR9715742Root15.318
SRR9715743Root12.675

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.476
SRR8749028MeJA induced 9h38.282
SRR8749029MeJA induced 9h21.683
SRR8749030Uninduced13.564
SRR8749031Uninduced6.845
SRR8749032Uninduced9.590

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.818
SRR8400027Control-Root23.331

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved