Gene detail information of Glyur000559s00020528.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29940.10nuclear RNA polymerase A2
NRXP_003542805.10PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X1 [Glycine max]
COGYP_005842044.11.00E-122RNA Polymerase [Fervidicoccus fontis Kam940]
Swissprottr|P38420|NRPB2_ARATH1.00E-106DNA-directed RNA polymerase II subunit 2
trEMBLtr|I1M0N3|I1M0N3_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00559118271131465+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03002RPA2, POLR1B EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0032549  ribonucleoside binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000559s00020528.1PF04563.10RNA_pol_Rpb2_1403536.80E-21
Glyur000559s00020528.1PF04561.9RNA_pol_Rpb2_21483253.50E-13
Glyur000559s00020528.1PF04565.11RNA_pol_Rpb2_34124761.10E-23
Glyur000559s00020528.1PF06883.7RNA_pol_Rpa2_45295862.50E-17
Glyur000559s00020528.1PF00562.23RNA_pol_Rpb2_664210115.00E-111
Glyur000559s00020528.1PF04560.15RNA_pol_Rpb2_7101311222.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.264
SRR1783600control12.194
SRR1783602moderate drought stress20.505
SRR1811619moderate drought stress20.405

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.926
DRR006520Root Summer glycyrrhizin high producing strain11.913
DRR006521Root Winter glycyrrhizin high producing strain7.516
DRR006522Root Winter glycyrrhizin high producing strain7.007
DRR006523Root Summer glycyrrhizin low producing strain15.649
DRR006524Root Summer glycyrrhizin low producing strain15.663
DRR006525Leaf Summer glycyrrhizin high producing strain5.662
DRR006526Leaf Summer glycyrrhizin high producing strain5.543

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.554
SRR2868004Drought Stress(Tissue:root)12.098
SRR2967015Control (Tissue:root)11.564

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.249
SRR9715740Leave10.260
SRR9715741Leave5.832
SRR9715739Root3.344
SRR9715742Root23.375
SRR9715743Root18.573

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.798
SRR8749028MeJA induced 9h14.459
SRR8749029MeJA induced 9h8.455
SRR8749030Uninduced1.634
SRR8749031Uninduced0.837
SRR8749032Uninduced1.502

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.515
SRR8400027Control-Root14.499

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved