Gene detail information of Glyur000559s00020530.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G38730.12.00E-94Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NRNP_001236525.11.96E-130uncharacterized protein LOC100305521 [Glycine max]
COGNP_441161.13.00E-60peptidyl-prolyl cis-trans isomerase [Synechocystis sp. PCC 6803]
Swissprottr|Q9ZVJ4|CYP22_ARATH4.00E-122Peptidyl-prolyl cis-trans isomerase CYP22
trEMBLtr|C6SVG5|C6SVG5_SOYBN7.00E-131Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00559134637137621+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09567PPIH, CYPH EC:5.2.1.8 Spliceosome map03040


Gene Ontology

biological_process

GO:0000413  protein peptidyl-prolyl isomerization

GO:0006457  protein folding


molecular_function

GO:0003755  peptidyl-prolyl cis-trans isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000559s00020530.1PF00160.16Pro_isomerase291913.10E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.923
SRR1783600control19.703
SRR1783602moderate drought stress17.610
SRR1811619moderate drought stress17.867

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.076
DRR006520Root Summer glycyrrhizin high producing strain20.116
DRR006521Root Winter glycyrrhizin high producing strain10.106
DRR006522Root Winter glycyrrhizin high producing strain10.004
DRR006523Root Summer glycyrrhizin low producing strain16.873
DRR006524Root Summer glycyrrhizin low producing strain16.736
DRR006525Leaf Summer glycyrrhizin high producing strain13.877
DRR006526Leaf Summer glycyrrhizin high producing strain13.060

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.112
SRR2868004Drought Stress(Tissue:root)48.861
SRR2967015Control (Tissue:root)47.957

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.356
SRR9715740Leave35.461
SRR9715741Leave34.531
SRR9715739Root23.571
SRR9715742Root23.612
SRR9715743Root27.210

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.986
SRR8749028MeJA induced 9h13.864
SRR8749029MeJA induced 9h18.208
SRR8749030Uninduced5.060
SRR8749031Uninduced1.322
SRR8749032Uninduced1.377

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.640
SRR8400027Control-Root43.282

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved