Gene detail information of Glyur000561s00023429.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31940.1 | 2.00E-29 | cytochrome P450, family 82, subfamily C, polypeptide 4 |
| NR | XP_007134137.1 | 2.45E-82 | hypothetical protein PHAVU_010G022400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SZ46|C82C4_ARATH | 1.00E-40 | Cytochrome P450 82C4 |
| trEMBL | tr|V7APK2|V7APK2_PHAVU | 9.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:ESW06131.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00561 | 9 | 1473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP82C4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000561s00023429.1 | PF00067.17 | p450 | 16 | 163 | 4.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.354 |
| SRR1783600 | control | 2.596 |
| SRR1783602 | moderate drought stress | 1.706 |
| SRR1811619 | moderate drought stress | 1.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.934 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.477 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.042 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.319 |
| SRR9715740 | Leave | 1.743 |
| SRR9715741 | Leave | 1.432 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.245 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.014 |
| SRR8400027 | Control-Root | 0.000 |