Gene detail information of Glyur000561s00023442.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G04560.17.00E-153transferases, transferring glycosyl groups
NRKEH18186.10lipid-A-disaccharide synthase [Medicago truncatula]
COGYP_002297421.13.00E-85lipid-A-disaccharide synthase [Rhodospirillum centenum SW]
Swissprottr|F4IF99|LPXB_ARATH0Probable lipid-A-disaccharide synthase, mitochondrial (Precursor)
trEMBLtr|A0A072TLS9|A0A072TLS9_MEDTR0Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KEH18186.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0056198972102401-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00748lpxB EC:2.4.1.182 Lipopolysaccharide biosynthesis map00540


Gene Ontology

biological_process

GO:0009245  lipid A biosynthetic process


molecular_function

GO:0008915  lipid-A-disaccharide synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000561s00023442.1PF02684.10LpxB534371.80E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.292
SRR1783600control12.679
SRR1783602moderate drought stress9.064
SRR1811619moderate drought stress8.850

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.755
DRR006520Root Summer glycyrrhizin high producing strain7.675
DRR006521Root Winter glycyrrhizin high producing strain5.139
DRR006522Root Winter glycyrrhizin high producing strain4.970
DRR006523Root Summer glycyrrhizin low producing strain7.801
DRR006524Root Summer glycyrrhizin low producing strain6.943
DRR006525Leaf Summer glycyrrhizin high producing strain5.965
DRR006526Leaf Summer glycyrrhizin high producing strain5.817

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.016
SRR2868004Drought Stress(Tissue:root)12.772
SRR2967015Control (Tissue:root)12.878

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.282
SRR9715740Leave7.680
SRR9715741Leave5.869
SRR9715739Root3.895
SRR9715742Root5.860
SRR9715743Root6.616

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.566
SRR8749028MeJA induced 9h9.005
SRR8749029MeJA induced 9h5.999
SRR8749030Uninduced8.601
SRR8749031Uninduced5.234
SRR8749032Uninduced3.291

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.766
SRR8400027Control-Root23.029