Gene detail information of Glyur000561s00023442.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G04560.1 | 7.00E-153 | transferases, transferring glycosyl groups |
NR | KEH18186.1 | 0 | lipid-A-disaccharide synthase [Medicago truncatula] |
COG | YP_002297421.1 | 3.00E-85 | lipid-A-disaccharide synthase [Rhodospirillum centenum SW] |
Swissprot | tr|F4IF99|LPXB_ARATH | 0 | Probable lipid-A-disaccharide synthase, mitochondrial (Precursor) |
trEMBL | tr|A0A072TLS9|A0A072TLS9_MEDTR | 0 | Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KEH18186.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00561 | 98972 | 102401 | - |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GT19 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00748 | lpxB | EC:2.4.1.182 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000561s00023442.1 | PF02684.10 | LpxB | 53 | 437 | 1.80E-72 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 12.292 |
SRR1783600 | control | 12.679 |
SRR1783602 | moderate drought stress | 9.064 |
SRR1811619 | moderate drought stress | 8.850 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 7.755 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 7.675 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 5.139 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 4.970 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 7.801 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 6.943 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.965 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.817 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 14.016 |
SRR2868004 | Drought Stress(Tissue:root) | 12.772 |
SRR2967015 | Control (Tissue:root) | 12.878 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 6.282 |
SRR9715740 | Leave | 7.680 |
SRR9715741 | Leave | 5.869 |
SRR9715739 | Root | 3.895 |
SRR9715742 | Root | 5.860 |
SRR9715743 | Root | 6.616 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 10.566 |
SRR8749028 | MeJA induced 9h | 9.005 |
SRR8749029 | MeJA induced 9h | 5.999 |
SRR8749030 | Uninduced | 8.601 |
SRR8749031 | Uninduced | 5.234 |
SRR8749032 | Uninduced | 3.291 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 18.766 |
SRR8400027 | Control-Root | 23.029 |