Gene detail information of Glyur000561s00023445.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04560.1 | 4.00E-139 | transferases, transferring glycosyl groups |
| NR | KEH18186.1 | 0 | lipid-A-disaccharide synthase [Medicago truncatula] |
| COG | YP_002297421.1 | 3.00E-78 | lipid-A-disaccharide synthase [Rhodospirillum centenum SW] |
| Swissprot | tr|F4IF99|LPXB_ARATH | 2.00E-171 | Probable lipid-A-disaccharide synthase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072TLS9|A0A072TLS9_MEDTR | 0 | Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KEH18186.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00561 | 114483 | 117725 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT19 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00748 | lpxB | EC:2.4.1.182 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000561s00023445.1 | PF02684.10 | LpxB | 53 | 410 | 8.90E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.939 |
| SRR1783600 | control | 3.430 |
| SRR1783602 | moderate drought stress | 5.015 |
| SRR1811619 | moderate drought stress | 4.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.668 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.682 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.860 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.878 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.254 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.726 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.107 |
| SRR2967015 | Control (Tissue:root) | 6.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.417 |
| SRR9715740 | Leave | 2.514 |
| SRR9715741 | Leave | 0.693 |
| SRR9715739 | Root | 2.747 |
| SRR9715742 | Root | 1.714 |
| SRR9715743 | Root | 1.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.434 |
| SRR8749028 | MeJA induced 9h | 3.590 |
| SRR8749029 | MeJA induced 9h | 1.784 |
| SRR8749030 | Uninduced | 1.889 |
| SRR8749031 | Uninduced | 1.440 |
| SRR8749032 | Uninduced | 0.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.847 |
| SRR8400027 | Control-Root | 8.542 |