Gene detail information of Glyur000561s00023447.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05160.1 | 7.00E-14 | cytochrome P450, family 88, subfamily A, polypeptide 3 |
| NR | XP_004510262.1 | 4.74E-42 | PREDICTED: beta-amyrin 11-oxidase-like [Cicer arietinum] |
| COG | YP_003888546.1 | 1.00E-11 | cytochrome P450 [Cyanothece sp. PCC 7822] |
| Swissprot | tr|B5BSX1|BAMO_GLYUR | 1.00E-43 | Beta-amyrin 11-oxidase |
| trEMBL | tr|A0A072TTK5|A0A072TTK5_MEDTR | 8.00E-41 | Cytochrome P450 family 88 protein {ECO:0000313|EMBL:KEH20767.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00561 | 123070 | 126178 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP88A3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04123 | KAO | EC:1.14.13.79 | Diterpenoid biosynthesis | map00904 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000561s00023447.1 | PF00067.17 | p450 | 63 | 111 | 2.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.698 |
| SRR1783600 | control | 3.224 |
| SRR1783602 | moderate drought stress | 3.898 |
| SRR1811619 | moderate drought stress | 4.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.676 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.610 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.471 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.063 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.513 |
| SRR2967015 | Control (Tissue:root) | 0.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.029 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.015 |
| SRR9715739 | Root | 0.581 |
| SRR9715742 | Root | 2.089 |
| SRR9715743 | Root | 1.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.970 |
| SRR8400027 | Control-Root | 3.018 |