Gene detail

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Gene detail information of Glyur000563s00023580.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75660.1	5.00E-125	5'-3' exoribonuclease 3
NR	XP_004506263.1	0	PREDICTED: 5'-3' exoribonuclease 3-like [Cicer arietinum]
Swissprot	tr\|Q9FQ03\|XRN3_ARATH	2.00E-146	5'-3' exoribonuclease 3
trEMBL	tr\|V7AFU3\|V7AFU3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04477.1}

Sequence

Transcript Sequence

>Glyur000563s00023580.1
ATGAAACACAGGGAAAACATTCTACATGAAATTTGCCTATTATCTTCCCCTTCCCCTAAAACCACCATCCAGTCCACCACCCCTAGGAAGACCACCTCTCCCACCCCTTCCACGAAAACCACCGTACATGTGTTATTGCATCTTAGCATTTCAACTGAAGATGGGGTAGAGAAAACTGATCATGGGTTAGGTTTGTTGGTGAGAACTGAGAAGACGCATAGAAGGAGAAACACAGCAGAGATAGCTATGGGTGTTCCAGGGTTTTATTGGTGGCTGGTCAACAAATACCCAAAGATTCTTGAAGACGTTAACACCTCTACCTCGCCAAGCGTGGAATATGATAACTTGTATCTAGACATGAACGCCATTATCCACCCATGCTTTAGCCCCAATGATCCCAACATTTCCCGGCCAACAACATTCGACCATGTGTTTAGAAACATCTTTGACTACGTTGATATGCTTGTCAGCATGGTTAAGCCTCGCAAGCTTTTGTACTTGGCTATCGATGGAGTATGTCCACGGGCGAAATTGGGCGGAGTAAGGCGCGGACGTTTCGCAAATGCAATGTTTGCTGAAATATGCGAAGCTGAGGAAGACAGGCTGAGGAAGCAATTTGAAATGGAAGGCAAACGGGTTTATCCTAAACGAGAATCTGAGGTGTCAGATCGCAATATAATAACACCAGGCACAGAGTTCATGCACGAACTTTCAAAGGCCCTTAAAAGCTATGTCTCTTCAAGGATGGCCTGTGATTCGTTATGGAAGGATATTATGGTGATTCTCTCTGATGCTAATGTTCCTGGAGAAGGGGAACACAAGATTATGTCATTCATAAGGGAACAACGTAGTTTTCCTGATTATGATCCAAACACCACCCACTGCTTATATGGCCCTGATGCTGATCTTATAATGCTTGGAATGGCAACCCATGAGCCCAAATTTTCAATGTTAAGAGAGGAGCAGCAGCAACAAATTGCTGCTAAGCCGTTCAAGCTTTTGCATATTTGGTTGTTGAGGGAATATCTTGAGATTGACATGAATATAGAAGATCCTCCCAAAAATTGCAGCATTGATTTTGAGCGGATAATTGATGATTTTATCTTCATGTGCTTCTTTGTTGGAAATGATTTTCTTCCCGACATACCATCTTTGGATACTCGCGAGGTCCAAAAGTACACTGAAGGGTTGTTATGGGTTCTTCAATACTATTTTTCAGGAGTTCCTTCATGGTCATGGTTGTATCCTTACCACTATGCTCCATTTGCTTCGGACTTCATGGGCATGGGTCAGGTGAGAGTAAGTTTTGAGAAGGGTGTCCCGTTCTTACCTTTTGATCAACTCTTAAGTGTTCTGCCCCCAAGGAGTGCTTGTGCACTTCCAAAAGCCTATGCACAATTGATGCTGGATGAGCAGTCTAGAATATTTGACTGCGAACTTCCTTATATAGACGAAAGACGGCTTTTGACTGCAACCAGAGAACTCATAAAGGGATTATCTGAAAGTGAAGCAGTAAGAAATTCGGTCAAAGTTGATAGCTTATTTGTTAGATGCAATAGCAAGTTGGCAGAGAAAATTTGCTACCTTTCACTAGAGTCAAACAAGTTAGATACGAGCATAAGCGATGGCATTGGGGGCATCATAAGTCTTTGCCATGAGTGTGTTGAGAAGCCGTGCTTGGGGACGGATATTTGTGACAACAGACAAGAAGATTGTGTCTTAAGTGTCTATTACGAGCTGCATGCTGGTGAAAGCAGTCAGATTCTTCTTTTACTATCGGGTGTGAACCTTCCACCAAAGAAAATCTTTGAATTTGACATAAAGGAAACAGTGATCTGGCATGAACGTCAGAAACATGGTCGTTTTGAGAGGTTCCCCCAAACGGCATCGAATGAAGGCAATTGGAGGAGTAGTGCAAAGAGTGAGGGAAGTGCTTCAAAGTTTTCCACAAATGCAACTACACAACATGGAAGAAGCCTCTCATTAAATCCACCTCCTGAAGTCATTTACAAAGGTGCTGGTGTTGGATGGAGTTCTTCAGGTAGAGGGAAGCATGCAGACAACAGTTCCAACATGAAAAGGATTGATCAGATGGCAGATGAGACAACGTCATCTTTGTCTCCTTCTCATGAACAACTCGAGGATGGAGGAGGATCTTATCAACATCATCAACGTCGTTCGCAGTCTGAGACTATGCCTTTTGGTCCTATGGGTGTGCCAGCGTTTTATGGATGGCTGGTCAACAAATACCCAAAGATTCTTGAAGATGTTAACACCGCTACCACGCCAAGCGTGGAGTATGACAACTTGTATCTCGACATGAATTCCATTATCCACCCATGCTTTAGCCCCGATCATCCCAACAGTTCCACGCCAACAACATTCGACCATGTGTTTAGAAACATCTTTGACTACGTTGATATGCTTGTCAGCATGGTTAAGCCTCGCAAGCTCTTGTACTTGGCTATCGATGGAGTATCTCCACGGGCGAAATTGGACCCACAAAGGCGCGGACGTTTCTCAANTGCAAAGAATGATGAAATACTTGAAGCTGAGGAAGACAGGCTGCGGAAGCAATTTGAAATGGAAGGCAAACGGGTTTTTCCTAAACAAGAATCTGAAGTGTCAGATCGCAATATAATAACACCTGGCACCGAGTTCATGCACGAACTCTCAAAGGCCCTTAAAAGCTATATCTCTTCAAGGATGGCTTTTGATTCGTTATGGAAGGATATTATGGTGATTCTTTCTGATGCTAATGTTCCTGGAGAAGGGGAACACAAGATTGTGTCATTCATAAGGGAACAACGTAGTTTTCCTGATTATGATCCAAACACCANCCACTGCTTATATGGCCCTGATGCTGATCTTATAATGCTTGGAATGACAACACACGAGCCCCATTTTTCAATATTAAGAGAGGAGCAGCAGCAACAAATTGCTGCTAAGCCATTCAAGCTTTTGCATATTTGGTTGTTGAGGGAATGTCTTGAGATTGACATGAAGATAGAAGATCCTCCCAAAAGTTGCAGCATTGATTTTGAGCGGATAATTGATGATTTTATCTTCATGTGCTTTTTTGTTGGAAATGATTTTCTGCCCCACATACCATCTTTGAAAACTCGCGAGGGGGCTATTAATTTGCTGATGACTGTTTACAAGAAACGGTTCAGTGAAATTGGAGGATATCTTGTGGACATAAATAAGCAAGTTGGGGAGAAACATGCCGCTCTTCTGAAGCTATCAAGAGTTGAAAAGTTTATACTTATGGTTGGAACATATGAAGAAAAAATCTTCAATAAAAGATCCAAAATTAGAGACCAGAAATTGAAAAGGCTTATTAGTGATTATGAGCATTCAAAGCAGGAAGAACAGAATGCAGCTAGTTGCTCATATCTTGACAATGAAAGTAGTTCTCATTCTGCTCTTCTCAATAAGGAGGACCCGTCTTCCGAAAATTCGTCACTTTCCTTGATTTTGCAGAACACAGAGGAATTAGAAGTGGAATTACACAAACGCATCATGGATAAACGTGACTTGCTTGAGAGTAGAGAGCTCCTGACCGACAAGATAAAATTGGGAAAAGCTGGATACAAAGAAAGATATTATAAAGAGAAATTTTCTGTCGAGAGCTCCACCTCCACAGACATTGAATGCAAAAAGAAGGAAATAGTGACAGTAAATTTTGAGAAAGGTGTCCCGTTCTTACCTTTTGATCAACTCTTAAGTGTTATGCCTCCAAGGAGNGCTTACGCACTTCCAAAAGCCTATGCACAATTGGTGCTGGATGAACAGTCTGGAATATTTGACTGCAAACTTCCTTATATAGACGAAAGACGGCTTTTGACTGCAACCAGAGAACTCATAAAGGGATTATCTGAAAGTGAAGCAGTAAGAAATTCGGTCAAAGTTGATAGCTTATTTGTTAGATGCAATAGCAAGTTGGCAGAGAAAATTTGCAACCTTTCACTAGAGTCAAACAAGTTAGATACGAGCATA

Protein Sequence

>Glyur000563s00023580.1
MKHRENILHEICLLSSPSPKTTIQSTTPRKTTSPTPSTKTTVHVLLHLSISTEDGVEKTDHGLGLLVRTEKTHRRRNTAEIAMGVPGFYWWLVNKYPKILEDVNTSTSPSVEYDNLYLDMNAIIHPCFSPNDPNISRPTTFDHVFRNIFDYVDMLVSMVKPRKLLYLAIDGVCPRAKLGGVRRGRFANAMFAEICEAEEDRLRKQFEMEGKRVYPKRESEVSDRNIITPGTEFMHELSKALKSYVSSRMACDSLWKDIMVILSDANVPGEGEHKIMSFIREQRSFPDYDPNTTHCLYGPDADLIMLGMATHEPKFSMLREEQQQQIAAKPFKLLHIWLLREYLEIDMNIEDPPKNCSIDFERIIDDFIFMCFFVGNDFLPDIPSLDTREVQKYTEGLLWVLQYYFSGVPSWSWLYPYHYAPFASDFMGMGQVRVSFEKGVPFLPFDQLLSVLPPRSACALPKAYAQLMLDEQSRIFDCELPYIDERRLLTATRELIKGLSESEAVRNSVKVDSLFVRCNSKLAEKICYLSLESNKLDTSISDGIGGIISLCHECVEKPCLGTDICDNRQEDCVLSVYYELHAGESSQILLLLSGVNLPPKKIFEFDIKETVIWHERQKHGRFERFPQTASNEGNWRSSAKSEGSASKFSTNATTQHGRSLSLNPPPEVIYKGAGVGWSSSGRGKHADNSSNMKRIDQMADETTSSLSPSHEQLEDGGGSYQHHQRRSQSETMPFGPMGVPAFYGWLVNKYPKILEDVNTATTPSVEYDNLYLDMNSIIHPCFSPDHPNSSTPTTFDHVFRNIFDYVDMLVSMVKPRKLLYLAIDGVSPRAKLDPQRRGRFSXAKNDEILEAEEDRLRKQFEMEGKRVFPKQESEVSDRNIITPGTEFMHELSKALKSYISSRMAFDSLWKDIMVILSDANVPGEGEHKIVSFIREQRSFPDYDPNTXHCLYGPDADLIMLGMTTHEPHFSILREEQQQQIAAKPFKLLHIWLLRECLEIDMKIEDPPKSCSIDFERIIDDFIFMCFFVGNDFLPHIPSLKTREGAINLLMTVYKKRFSEIGGYLVDINKQVGEKHAALLKLSRVEKFILMVGTYEEKIFNKRSKIRDQKLKRLISDYEHSKQEEQNAASCSYLDNESSSHSALLNKEDPSSENSSLSLILQNTEELEVELHKRIMDKRDLLESRELLTDKIKLGKAGYKERYYKEKFSVESSTSTDIECKKKEIVTVNFEKGVPFLPFDQLLSVMPPRXAYALPKAYAQLVLDEQSGIFDCKLPYIDERRLLTATRELIKGLSESEAVRNSVKVDSLFVRCNSKLAEKICNLSLESNKLDTSI

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00563	121	18756	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12619	XRN2, RAT1	EC:3.1.13.-	Ribosome biogenesis in eukaryotes	map03008
K12619	XRN2, RAT1	EC:3.1.13.-	RNA degradation	map03018

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000563s00023580.1	PF03159.13	XRN_N	83	321	1.30E-88
Glyur000563s00023580.1	PF03159.13	XRN_N	737	975	6.90E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.728
SRR1783600	control	3.872
SRR1783602	moderate drought stress	3.629
SRR1811619	moderate drought stress	3.746

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.508
DRR006520	Root Summer glycyrrhizin high producing strain	6.901
DRR006521	Root Winter glycyrrhizin high producing strain	2.481
DRR006522	Root Winter glycyrrhizin high producing strain	2.080
DRR006523	Root Summer glycyrrhizin low producing strain	5.560
DRR006524	Root Summer glycyrrhizin low producing strain	5.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.849
SRR2868004	Drought Stress(Tissue:root)	1.040
SRR2967015	Control (Tissue:root)	1.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.224
SRR9715740	Leave	1.360
SRR9715741	Leave	0.903
SRR9715739	Root	0.243
SRR9715742	Root	2.552
SRR9715743	Root	2.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.007
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.397
SRR8400027	Control-Root	1.758