Gene detail information of Glyur000563s00023586.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G44200.10NIMA (never in mitosis, gene A)-related 6
NRKHN19918.10Serine/threonine-protein kinase Nek5 [Glycine soja]
COGYP_827012.12.00E-27serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprottr|Q0WPH8|NEK5_ARATH0Serine/threonine-protein kinase Nek5
trEMBLtr|I1LKM7|I1LKM7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005633762044517-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.1.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000563s00023586.1PF00069.20Pkinase82624.40E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.198
SRR1783600control31.234
SRR1783602moderate drought stress19.933
SRR1811619moderate drought stress19.931

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.801
DRR006520Root Summer glycyrrhizin high producing strain12.618
DRR006521Root Winter glycyrrhizin high producing strain6.919
DRR006522Root Winter glycyrrhizin high producing strain6.746
DRR006523Root Summer glycyrrhizin low producing strain13.584
DRR006524Root Summer glycyrrhizin low producing strain13.717
DRR006525Leaf Summer glycyrrhizin high producing strain3.399
DRR006526Leaf Summer glycyrrhizin high producing strain3.363

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.426
SRR2868004Drought Stress(Tissue:root)27.184
SRR2967015Control (Tissue:root)29.298

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.642
SRR9715740Leave3.489
SRR9715741Leave4.345
SRR9715739Root3.595
SRR9715742Root20.173
SRR9715743Root18.673

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.571
SRR8749028MeJA induced 9h11.550
SRR8749029MeJA induced 9h6.775
SRR8749030Uninduced5.593
SRR8749031Uninduced3.166
SRR8749032Uninduced1.604

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.477
SRR8400027Control-Root36.586

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved