Gene detail

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Gene detail information of Glyur000563s00023592.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01820.1	5.00E-140	Leucine-rich repeat protein kinase family protein
NR	XP_006591063.1	0	PREDICTED: probable receptor protein kinase TMK1-like [Glycine max]
COG	YP_004775215.1	5.00E-25	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|K7LQ39\|K7LQ39_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G18310.2}

Sequence

Transcript Sequence

>Glyur000563s00023592.1
AGAAAAGAAAACGAAAGAGAAGGGAGTTTTGAACAGGGACTGTACTGTGTCTGTCGGTCATGGTGGTGGGGTGGGACTGTGGACTCAGAGAGAGACTTTCTTTAATAAGCCTTGCAATGCTTCCTTCCTTCGTTGATGAAAAGAAGCAATAAAAAGAGTCTCACGTACTCTTCAGTCTTCACACACACACTCCTTCTTACCTCGAAATCGGGAATTTCTACTCTCTTCTCCCTCTAGTACTCCTTCGCCATTTTCTCAATAAAAATAAAAATTCCCTTTTGTTTATGCCTCTTTCTTTGCAAGAGAAAAGTAGTAGCATACACGCTCCTTCACTCACTCACCAACGTTCTGTTCCTTTTTTCTATCCGGGTCCTTTTGTTACTGTCTCATTTTGGTCACAGAACTCAAATGCTGATCTATTTCACTTATGGGGTTGTGAGTTTTCTGGGAAAGTTTATGCCTTGATTATTATTTTCATTTCACTAGGGTTAATTAAGGTAGCCATGGTAAGTATTCAGGTGGAAGTTTGCATCTTCCTCTTCTGTTCCATGATGATTACAATGGCTTATGGTGATACTAACCCAAATGATCTCAAAATTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCAGACAATGGAGATGACCCCTGTGGCCCTCCTTCATGGCCTTACGTGTTCTGCTCTGGTGGTAGAGTCACTCAGATTCAGGCTAAGAATCTGGGTCTTAAAGGATCATTGCCCCCAAACTTCAACCAGCTCTCAGAACTCCAGAATTTGGGTCTTCAACGCAACAACCTCAGTGGGATGTTGCCTAGTTTCAGTGGATTATCAAAATTGCAATTTGCTTTCTTGGATNACAATGAGTTTGATGCAATCCCATCCGATTTCTTCAATGGACTCGGCAGCATTAGGGTCTTGTCCTTGGAAGAAAACCAATTGATAAATGCTAGTAAAGGTTGGTCATTTCCCTTGGACTTGGAAAATTCAGCACAATTAACCAACCTTTCTCTGGTGAATTGCAATTTGGTTGGACCATTGCCTGATTTTCTAGGCACATTGCCTTCTCTCACAAATTTGAGGCTTTCAGGCAACAGAATTTCTGGTCAAATCCCATTTAGTTTTGGTCAATCTTCAATGCAGGTTTTGTGGTTGAATGATCAACAAGGCGGTGGAATGACAGGTCCTATTGATGTTATTGCTTCAATGACCTTCCTGAGACAGGTTTGGCTACATGGAAACCACTTCACAGGGACAATTCCACACAACATTGGAAATCTAACTTCCTTGCAGGAGCTTAACCTCAATGGCAACCAACTTGTTGGCTTGATTCCAAATACCTTGGCAAATATGGACCTTGAGATATTGGTGTTAAATAATAACATGTTCATGGGTCCAATACCAAAGTTTAAGGCTGCCAAAGTATCTTATGATTCCAATTTATTTTGTCAACCTAAGCCTGGGCTTGAATGTGCCCCTCAAGTTACTGCCCTGCTGGATTTTCTCCAAAATCTGAATTACCCATCATTTCTCATTTCTAAATGGTCTGGTAATGAACCGTGTGGAGAGCAATGGTTTGGATTGAGCTGCAATCCAAACTCAGAGGTATCTATAATCAATTTTCCTAGACGAAACCTCACTGGTACACTGAGTCCCTCACTTGCTAAGTTAGATTCACTCCTTGAAATCAGGCTTGCAGGAAACAATATAACCGGCGAAGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGGTTGTTGGATTTAGGTGATAATAATGTTGAGCCTCCATTGCCAAAGTTTGATGATAGTGTGAAGGTTATCATTGAGGGTAACCCTCTTCTTGTTAATCAAACTGGAAAGAGTCCCCTGCCTATTAGCAGCCCACCGCCTTTGAGTGCACCACCTTCACCGCACAACCTGTCACCGCCGCCACCATCCTCCCACGCGCCACCTTCCTATAATCAGAGTTCAGGCTCAAGTCAGCCTAGTTCTGTCCAATTNAAGCCTCAACCAAATTACTTCAAAAGATCCAAAACAGTAGTGATAGTGGCTGGAGTTGCAATCTTCGCATTTGTAGCTCTTTTGGTTATTCCTCTCTTCATATGTCGCTTGAAGAAGAAAAAAGCCTCCTTGGATGCTCCTAGCCCTGTTGTGGTTCACACTCAAGATCCATCTGATCCAGAAAAGATGGTTAAATTTGCAGTTTCAAATAGCACCATTGGAAGCTTATCAACAAAGACAGGGATAAGTTCTCTGACTAACATTAGTGGTGAAACTGAAAGCTCTCATATAATTGATGCCGGTAACCTTGTCATCTCCGTTCAAGTTCTACGCAAGGTCACCAAGGATTTCGCTTCAGAAAATGAGCTAGGCCATGGTGGGTTTGGAACTGTTTACAAAGGTGAACTAGAAGATGGGTCAAAAATAGCAGTGAAGAGAATGGAGTGTGGAGCTATTAGCAGTAAAGGACTAGACGAGTTTCAAGNTGAAATAGCTGTTCTTTCCAAAGTCCGTCACCGGCATTTGGTGTCCCTGCTAGGCTATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGCCTATGGGTGCTCTAAGCAGACATCTTTTCTATTGGAAAAGCTTGAATCTGGAGCCTCTGTCTTGGTCACAGAGGCTTGTAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCACAGTCTTGCCCGCCATATCTTCATCCATCGAGACCTCAAGTCTTCTAATATTCTACTAGGGGATGATTTTCGGGCTAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGTAACAAAGCTTGCTGGAACATTTGGATACCTTGCCCCAGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGATGTGTTCAGCTATGGTGTGGTGTTGATGGAACTTCTGACCGGACTAATGGCCCTTGACGAGAGCCGGCCAGAGGAAAACCGGTACTTGGCCGAATGGTTTTGGCAAATTAAATCGAGCAAAGAAAAACTCATGGCTGCCATTGATCCGGCTCTCGAAGCGAGTGAAGAGACTTTCGAGAGTATTTCCATTGTAGCTGAACTTGCTGGACATTGCACTGCTAGGGAAGCAAACCACAGGCCAGATATGGGCCATGCAGTCAAAGTGCTGGCAGAATTAATAGAGAAATGGCAACCGGTTGATGAAGAATTTGATTACGGCTATGGCATTGACTACAATCAACCACTCCCCCAGATGTTGAAAATTTGGAAGGAAGCAGAAGGCAAAGAAACCAGCTGTGCAAGTCTTGAAGACAGTAAAGGAAGTATACCAGCTAGGCCTGCTGGTTTTGCAGACTCCTTTACTTCTTCTGATGCTCGATGATTTGGATAATTCACTTTTGTATTGGTCGTGTCTGTTTTGGCAGCAAAAAAGTATAATTTATTTGTTTCCAATTCTTGCTTCTGGACTTGATAGAGTACTACAAGGTAACCATCCAACAACAGGTATGAAGATGTAGATAAAGAAATATTATTTTAATTCT

Protein Sequence

>Glyur000563s00023592.1
MPLSLQEKSSSIHAPSLTHQRSVPFFYPGPFVTVSFWSQNSNADLFHLWGCEFSGKVYALIIIFISLGLIKVAMVSIQVEVCIFLFCSMMITMAYGDTNPNDLKILNDFRKGLKNPELLKWPDNGDDPCGPPSWPYVFCSGGRVTQIQAKNLGLKGSLPPNFNQLSELQNLGLQRNNLSGMLPSFSGLSKLQFAFLDXNEFDAIPSDFFNGLGSIRVLSLEENQLINASKGWSFPLDLENSAQLTNLSLVNCNLVGPLPDFLGTLPSLTNLRLSGNRISGQIPFSFGQSSMQVLWLNDQQGGGMTGPIDVIASMTFLRQVWLHGNHFTGTIPHNIGNLTSLQELNLNGNQLVGLIPNTLANMDLEILVLNNNMFMGPIPKFKAAKVSYDSNLFCQPKPGLECAPQVTALLDFLQNLNYPSFLISKWSGNEPCGEQWFGLSCNPNSEVSIINFPRRNLTGTLSPSLAKLDSLLEIRLAGNNITGEVPSNFTELKSLRLLDLGDNNVEPPLPKFDDSVKVIIEGNPLLVNQTGKSPLPISSPPPLSAPPSPHNLSPPPPSSHAPPSYNQSSGSSQPSSVQXKPQPNYFKRSKTVVIVAGVAIFAFVALLVIPLFICRLKKKKASLDAPSPVVVHTQDPSDPEKMVKFAVSNSTIGSLSTKTGISSLTNISGETESSHIIDAGNLVISVQVLRKVTKDFASENELGHGGFGTVYKGELEDGSKIAVKRMECGAISSKGLDEFQXEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPMGALSRHLFYWKSLNLEPLSWSQRLVIALDVARGMEYLHSLARHIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSSKEKLMAAIDPALEASEETFESISIVAELAGHCTAREANHRPDMGHAVKVLAELIEKWQPVDEEFDYGYGIDYNQPLPQMLKIWKEAEGKETSCASLEDSKGSIPARPAGFADSFTSSDAR

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00563	76245	80464	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000563s00023592.1	PF08263.7	LRRNT_2	100	140	0.0011
Glyur000563s00023592.1	PF00560.28	LRR_1	267	287	0.26
Glyur000563s00023592.1	PF00560.28	LRR_1	340	361	0.2
Glyur000563s00023592.1	PF08263.7	LRRNT_2	404	442	0.0047
Glyur000563s00023592.1	PF00069.20	Pkinase	699	969	4.30E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.382
SRR1783600	control	8.426
SRR1783602	moderate drought stress	5.358
SRR1811619	moderate drought stress	5.336

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.682
DRR006520	Root Summer glycyrrhizin high producing strain	7.708
DRR006521	Root Winter glycyrrhizin high producing strain	1.037
DRR006522	Root Winter glycyrrhizin high producing strain	1.066
DRR006523	Root Summer glycyrrhizin low producing strain	6.142
DRR006524	Root Summer glycyrrhizin low producing strain	6.056
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.809
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.712
SRR2868004	Drought Stress(Tissue:root)	4.023
SRR2967015	Control (Tissue:root)	4.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.296
SRR9715740	Leave	0.560
SRR9715741	Leave	0.292
SRR9715739	Root	6.719
SRR9715742	Root	11.394
SRR9715743	Root	12.499

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.347
SRR8749028	MeJA induced 9h	2.275
SRR8749029	MeJA induced 9h	1.847
SRR8749030	Uninduced	0.348
SRR8749031	Uninduced	0.043
SRR8749032	Uninduced	0.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.834
SRR8400027	Control-Root	11.741