Gene detail information of Glyur000563s00023595.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27230.2 | 2.00E-100 | transcription factor-related |
| NR | XP_003539152.1 | 0 | PREDICTED: transcription factor LHW-like [Glycine max] |
| Swissprot | tr|Q9XIN0|LHW_ARATH | 8.00E-118 | Transcription factor LHW |
| trEMBL | tr|K7LQ38|K7LQ38_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18290.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00563 | 102941 | 109699 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000563s00023595.1 | PF14215.1 | bHLH-MYC_N | 49 | 220 | 1.10E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.899 |
| SRR1783600 | control | 30.247 |
| SRR1783602 | moderate drought stress | 31.775 |
| SRR1811619 | moderate drought stress | 31.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.391 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.717 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.574 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.421 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.233 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 66.682 |
| SRR2868004 | Drought Stress(Tissue:root) | 74.055 |
| SRR2967015 | Control (Tissue:root) | 90.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.366 |
| SRR9715740 | Leave | 23.127 |
| SRR9715741 | Leave | 23.051 |
| SRR9715739 | Root | 6.509 |
| SRR9715742 | Root | 33.532 |
| SRR9715743 | Root | 28.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.219 |
| SRR8749028 | MeJA induced 9h | 29.078 |
| SRR8749029 | MeJA induced 9h | 10.227 |
| SRR8749030 | Uninduced | 17.166 |
| SRR8749031 | Uninduced | 10.686 |
| SRR8749032 | Uninduced | 7.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 70.828 |
| SRR8400027 | Control-Root | 61.033 |