Gene detail information of Glyur000564s00029581.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13290.1 | 5.00E-90 | C2H2-like zinc finger protein |
| NR | XP_006574881.1 | 2.52E-151 | PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] |
| Swissprot | tr|Q9FX68|ZWIP6_ARATH | 2.00E-115 | Zinc finger protein WIP6 |
| trEMBL | tr|K7K7F4|K7K7F4_SOYBN | 9.00E-152 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00564 | 35905 | 37445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000564s00029581.1 | PF13894.1 | zf-C2H2_4 | 145 | 164 | 0.003 |
| Glyur000564s00029581.1 | PF13894.1 | zf-C2H2_4 | 232 | 252 | 0.056 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.093 |
| SRR2967015 | Control (Tissue:root) | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.020 |
| SRR8749029 | MeJA induced 9h | 0.062 |
| SRR8749030 | Uninduced | 0.193 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.093 |
| SRR8400027 | Control-Root | 0.017 |