Gene detail information of Glyur000564s00029588.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05610.2 | 4.00E-82 | alfin-like 1 |
| NR | XP_007133887.1 | 1.27E-154 | hypothetical protein PHAVU_010G000500g [Phaseolus vulgaris] |
| Swissprot | tr|Q75IR6|ALFL1_ORYSJ | 5.00E-118 | PHD finger protein ALFIN-LIKE 1 |
| trEMBL | tr|V7ANT5|V7ANT5_PHAVU | 5.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:ESW05881.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00564 | 87939 | 91927 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Alfin-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000564s00029588.1 | PF12165.3 | DUF3594 | 6 | 134 | 1.00E-73 |
| Glyur000564s00029588.1 | PF00628.24 | PHD | 184 | 231 | 2.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 72.271 |
| SRR1783600 | control | 73.052 |
| SRR1783602 | moderate drought stress | 67.797 |
| SRR1811619 | moderate drought stress | 67.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 67.658 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.565 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 93.475 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 90.317 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 64.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 63.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.545 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 108.779 |
| SRR2868004 | Drought Stress(Tissue:root) | 103.121 |
| SRR2967015 | Control (Tissue:root) | 107.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 57.867 |
| SRR9715740 | Leave | 43.589 |
| SRR9715741 | Leave | 71.170 |
| SRR9715739 | Root | 68.142 |
| SRR9715742 | Root | 60.990 |
| SRR9715743 | Root | 57.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 130.222 |
| SRR8749028 | MeJA induced 9h | 92.997 |
| SRR8749029 | MeJA induced 9h | 114.791 |
| SRR8749030 | Uninduced | 83.182 |
| SRR8749031 | Uninduced | 85.332 |
| SRR8749032 | Uninduced | 104.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 89.478 |
| SRR8400027 | Control-Root | 85.546 |