Gene detail information of Glyur000565s00025204.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G18960.10H(+)-ATPase 1
NRXP_003546412.10PREDICTED: plasma membrane ATPase 4-like isoform 1 [Glycine max]
COGYP_005270382.15.00E-163plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030]
Swissprottr|Q03194|PMA4_NICPL0Plasma membrane ATPase 4
trEMBLtr|I1MGZ2|I1MGZ2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G17530.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00565128837134055-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01535PMA1, PMA2 EC:3.6.3.6 Oxidative phosphorylation map00190


Gene Ontology

biological_process

GO:0006754  ATP biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0016887  ATPase activity

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000565s00025204.1PF00690.21Cation_ATPase_N10731.20E-14
Glyur000565s00025204.1PF00122.15E1-E2_ATPase1452842.50E-27
Glyur000565s00025204.1PF00702.21Hydrolase2885532.60E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.887
SRR1783600control0.853
SRR1783602moderate drought stress2.032
SRR1811619moderate drought stress1.710

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.654
DRR006520Root Summer glycyrrhizin high producing strain0.605
DRR006521Root Winter glycyrrhizin high producing strain0.877
DRR006522Root Winter glycyrrhizin high producing strain0.865
DRR006523Root Summer glycyrrhizin low producing strain0.398
DRR006524Root Summer glycyrrhizin low producing strain0.314
DRR006525Leaf Summer glycyrrhizin high producing strain0.746
DRR006526Leaf Summer glycyrrhizin high producing strain0.639

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)333.951
SRR2868004Drought Stress(Tissue:root)374.517
SRR2967015Control (Tissue:root)233.535

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.523
SRR9715740Leave0.124
SRR9715741Leave0.531
SRR9715739Root1.367
SRR9715742Root1.693
SRR9715743Root1.400

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.530
SRR8749028MeJA induced 9h14.928
SRR8749029MeJA induced 9h15.712
SRR8749030Uninduced7.709
SRR8749031Uninduced14.710
SRR8749032Uninduced9.120

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.225
SRR8400027Control-Root31.547

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved