Gene detail information of Glyur000567s00021954.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09150.25.00E-78phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
NRXP_004491666.12.20E-152PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like [Cicer arietinum]
Swissprottr|Q9SR43|PFBS_ARATH4.00E-96Phytochromobilin:ferredoxin oxidoreductase, chloroplastic (Precursor)
trEMBLtr|K7KBQ4|K7KBQ4_SOYBN1.00E-152Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47490.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005672767232077+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08101E1.3.7.4 EC:1.3.7.4 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0010024  phytochromobilin biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016636  oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor

GO:0050897  cobalt ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000567s00021954.1PF05996.7Fe_bilin_red651723.20E-21
Glyur000567s00021954.1PF05996.7Fe_bilin_red1742501.60E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.569
SRR1783600control7.554
SRR1783602moderate drought stress7.458
SRR1811619moderate drought stress7.304

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.320
DRR006520Root Summer glycyrrhizin high producing strain9.052
DRR006521Root Winter glycyrrhizin high producing strain12.885
DRR006522Root Winter glycyrrhizin high producing strain12.529
DRR006523Root Summer glycyrrhizin low producing strain7.953
DRR006524Root Summer glycyrrhizin low producing strain8.615
DRR006525Leaf Summer glycyrrhizin high producing strain6.232
DRR006526Leaf Summer glycyrrhizin high producing strain6.208

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.419
SRR2868004Drought Stress(Tissue:root)9.431
SRR2967015Control (Tissue:root)9.336

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.749
SRR9715740Leave7.722
SRR9715741Leave5.661
SRR9715739Root2.008
SRR9715742Root4.349
SRR9715743Root3.523

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.808
SRR8749028MeJA induced 9h8.627
SRR8749029MeJA induced 9h9.757
SRR8749030Uninduced4.953
SRR8749031Uninduced2.463
SRR8749032Uninduced3.370

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.461
SRR8400027Control-Root9.567

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved