Gene detail information of Glyur000567s00021956.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35770.1 | 6.00E-90 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003617930.1 | 0 | Transcriptional regulator STERILE APETALA [Medicago truncatula] |
| Swissprot | tr|Q9FKH1|SAP_ARATH | 5.00E-117 | Transcriptional regulator STERILE APETALA |
| trEMBL | tr|G7KEL4|G7KEL4_MEDTR | 0 | Transcriptional regulator sterile apetala protein, putative {ECO:0000313|EMBL:AET00889.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00567 | 41322 | 46633 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SAP |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 0.028 |
| SRR1811619 | moderate drought stress | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.667 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.766 |
| SRR2967015 | Control (Tissue:root) | 1.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.267 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.047 |
| SRR9715739 | Root | 0.102 |
| SRR9715742 | Root | 0.080 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.104 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.083 |
| SRR8749031 | Uninduced | 0.050 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.195 |
| SRR8400027 | Control-Root | 0.181 |