Gene detail information of Glyur000568s00030995.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65110.10acyl-CoA oxidase 2
NRXP_004504056.10PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Cicer arietinum]
COGYP_004775877.12.00E-156acyl-CoA oxidase [Cyclobacterium marinum DSM 745]
Swissprottr|O65201|ACOX2_ARATH0Acyl-coenzyme A oxidase 2, peroxisomal (Precursor)
trEMBLtr|I1K4K8|I1K4K8_SOYBN0Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00568133961138304+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0006635  fatty acid beta-oxidation

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005777  peroxisome


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0003997  acyl-CoA oxidase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000568s00030995.1PF02770.14Acyl-CoA_dh_M1832412.50E-10
Glyur000568s00030995.1PF00441.19Acyl-CoA_dh_13334902.70E-11
Glyur000568s00030995.1PF01756.14ACOX5346893.70E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.934
SRR1783600control10.735
SRR1783602moderate drought stress11.704
SRR1811619moderate drought stress11.527

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.276
DRR006520Root Summer glycyrrhizin high producing strain9.967
DRR006521Root Winter glycyrrhizin high producing strain13.554
DRR006522Root Winter glycyrrhizin high producing strain13.442
DRR006523Root Summer glycyrrhizin low producing strain25.633
DRR006524Root Summer glycyrrhizin low producing strain25.380
DRR006525Leaf Summer glycyrrhizin high producing strain8.291
DRR006526Leaf Summer glycyrrhizin high producing strain8.150

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.071
SRR2868004Drought Stress(Tissue:root)42.198
SRR2967015Control (Tissue:root)48.119

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.237
SRR9715740Leave16.572
SRR9715741Leave45.745
SRR9715739Root6.419
SRR9715742Root10.963
SRR9715743Root10.312

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h120.702
SRR8749028MeJA induced 9h280.329
SRR8749029MeJA induced 9h368.474
SRR8749030Uninduced254.597
SRR8749031Uninduced728.027
SRR8749032Uninduced410.944

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.146
SRR8400027Control-Root18.157

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved