Gene detail information of Glyur000569s00020976.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54490.10exoribonuclease 4
NRXP_003554686.10PREDICTED: 5'-3' exoribonuclease 4-like isoform X1 [Glycine max]
Swissprottr|Q9FQ04|XRN4_ARATH05'-3' exoribonuclease 4
trEMBLtr|I1NC68|I1NC68_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G43160.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005694109451513+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20553XRN4 EC:3.1.13.- MAPK signaling pathway - plant map04016


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004527  exonuclease activity

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000569s00020976.1PF03159.13XRN_N11963.00E-69
Glyur000569s00020976.1PF03159.13XRN_N2383212.50E-29
Glyur000569s00020976.1PF00098.18zf-CCHC3303449.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.278
SRR1783600control17.428
SRR1783602moderate drought stress24.982
SRR1811619moderate drought stress24.787

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.041
DRR006520Root Summer glycyrrhizin high producing strain16.793
DRR006521Root Winter glycyrrhizin high producing strain46.203
DRR006522Root Winter glycyrrhizin high producing strain44.979
DRR006523Root Summer glycyrrhizin low producing strain19.480
DRR006524Root Summer glycyrrhizin low producing strain18.936
DRR006525Leaf Summer glycyrrhizin high producing strain13.410
DRR006526Leaf Summer glycyrrhizin high producing strain13.504

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.073
SRR2868004Drought Stress(Tissue:root)35.454
SRR2967015Control (Tissue:root)38.009

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.295
SRR9715740Leave16.019
SRR9715741Leave21.957
SRR9715739Root5.515
SRR9715742Root19.090
SRR9715743Root16.589

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.810
SRR8749028MeJA induced 9h31.399
SRR8749029MeJA induced 9h15.221
SRR8749030Uninduced24.706
SRR8749031Uninduced25.052
SRR8749032Uninduced18.453

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.776
SRR8400027Control-Root30.531

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved