Gene detail information of Glyur000570s00022979.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14590.10Isocitrate/isopropylmalate dehydrogenase family protein
NRXP_007151010.10hypothetical protein PHAVU_004G011200g [Phaseolus vulgaris]
COGYP_004042178.10isocitrate dehydrogenase (nadp) [Paludibacter propionicigenes WB4]
Swissprottr|Q8LPJ5|ICDHP_ARATH0Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial (Precursor)
trEMBLtr|V7BYJ3|V7BYJ3_PHAVU0Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00570102736108329-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00031IDH1, IDH2, icd EC:1.1.1.42 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146


Gene Ontology

biological_process

GO:0006102  isocitrate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0004450  isocitrate dehydrogenase (NADP+) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000570s00022979.1PF00180.15Iso_dh671694.20E-17
Glyur000570s00022979.1PF00180.15Iso_dh2114848.90E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.570
SRR1783600control24.216
SRR1783602moderate drought stress14.728
SRR1811619moderate drought stress14.401

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.364
DRR006520Root Summer glycyrrhizin high producing strain21.396
DRR006521Root Winter glycyrrhizin high producing strain24.706
DRR006522Root Winter glycyrrhizin high producing strain24.015
DRR006523Root Summer glycyrrhizin low producing strain21.119
DRR006524Root Summer glycyrrhizin low producing strain21.129
DRR006525Leaf Summer glycyrrhizin high producing strain23.462
DRR006526Leaf Summer glycyrrhizin high producing strain23.212

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.056
SRR2868004Drought Stress(Tissue:root)42.678
SRR2967015Control (Tissue:root)35.867

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.244
SRR9715740Leave23.915
SRR9715741Leave28.240
SRR9715739Root6.154
SRR9715742Root23.098
SRR9715743Root19.047

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.825
SRR8749028MeJA induced 9h40.187
SRR8749029MeJA induced 9h27.127
SRR8749030Uninduced24.624
SRR8749031Uninduced16.006
SRR8749032Uninduced12.862

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.054
SRR8400027Control-Root29.772

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved