Gene detail information of Glyur000570s00022980.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14580.10polyribonucleotide nucleotidyltransferase, putative
NRXP_004489245.10PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum]
COGYP_004196344.10polyribonucleotide nucleotidyltransferase [Desulfobulbus propionicus DSM 2032]
Swissprottr|Q9S7G6|PNP2_ARATH0Polyribonucleotide nucleotidyltransferase 2, mitochondrial (Precursor)
trEMBLtr|V7C0V9|V7C0V9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW23003.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00570111650120656+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00962pnp, PNPT1 EC:2.7.7.8 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA degradationmap03018


Gene Ontology

biological_process

GO:0006396  RNA processing

GO:0006402  mRNA catabolic process


molecular_function

GO:0000175  3'-5'-exoribonuclease activity

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004654  polyribonucleotide nucleotidyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000570s00022980.1PF01138.16RNase_PH811648.80E-10
Glyur000570s00022980.1PF03725.10RNase_PH_C1672296.10E-13
Glyur000570s00022980.1PF03726.9PNPase2623421.40E-16
Glyur000570s00022980.1PF01138.16RNase_PH3454782.00E-21
Glyur000570s00022980.1PF03725.10RNase_PH_C4825583.10E-07
Glyur000570s00022980.1PF00575.18S16497192.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.819
SRR1783600control3.866
SRR1783602moderate drought stress4.266
SRR1811619moderate drought stress4.216

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.448
DRR006520Root Summer glycyrrhizin high producing strain3.358
DRR006521Root Winter glycyrrhizin high producing strain1.892
DRR006522Root Winter glycyrrhizin high producing strain1.814
DRR006523Root Summer glycyrrhizin low producing strain5.214
DRR006524Root Summer glycyrrhizin low producing strain4.971
DRR006525Leaf Summer glycyrrhizin high producing strain1.035
DRR006526Leaf Summer glycyrrhizin high producing strain1.075

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.438
SRR2868004Drought Stress(Tissue:root)6.246
SRR2967015Control (Tissue:root)6.032

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.248
SRR9715740Leave3.704
SRR9715741Leave1.967
SRR9715739Root2.039
SRR9715742Root4.802
SRR9715743Root4.496

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.871
SRR8749028MeJA induced 9h5.404
SRR8749029MeJA induced 9h3.849
SRR8749030Uninduced0.360
SRR8749031Uninduced0.210
SRR8749032Uninduced0.500

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.619
SRR8400027Control-Root6.677

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved