Gene detail information of Glyur000572s00019038.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17980.1 | 2.00E-74 | NAC domain containing protein 71 |
| NR | XP_004511780.1 | 2.53E-171 | PREDICTED: NAC domain-containing protein 89-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9FFI5|NAC86_ARATH | 3.00E-62 | NAC domain-containing protein 86 {ECO:0000312|EMBL:AED92405.1} |
| trEMBL | tr|G7JZX4|G7JZX4_MEDTR | 2.00E-169 | NAC transcription factor-like protein {ECO:0000313|EMBL:AES94428.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00572 | 105209 | 107684 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000572s00019038.1 | PF02365.10 | NAM | 6 | 130 | 2.90E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.281 |
| SRR1783600 | control | 1.267 |
| SRR1783602 | moderate drought stress | 1.195 |
| SRR1811619 | moderate drought stress | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.873 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.640 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.118 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.323 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.022 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.331 |
| SRR2967015 | Control (Tissue:root) | 3.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.374 |
| SRR9715740 | Leave | 0.234 |
| SRR9715741 | Leave | 0.411 |
| SRR9715739 | Root | 0.228 |
| SRR9715742 | Root | 1.334 |
| SRR9715743 | Root | 0.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.606 |
| SRR8749028 | MeJA induced 9h | 0.122 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.090 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.784 |
| SRR8400027 | Control-Root | 1.642 |