Gene detail

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Gene detail information of Glyur000573s00021785.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04530.1	5.00E-131	3-ketoacyl-CoA synthase 19
NR	KEH44511.1	0	3-ketoacyl-CoA synthase-like protein [Medicago truncatula]
COG	YP_002488003.1	3.00E-10	Naringenin-chalcone synthase [Arthrobacter chlorophenolicus A6]
Swissprot	tr\|Q9LZ72\|KCS21_ARATH	5.00E-161	3-ketoacyl-CoA synthase 21
trEMBL	tr\|A0A072VS55\|A0A072VS55_MEDTR	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000573s00021785.1
ATGTTCACCACACTCGACAACCTCTTCAAAAGAACCGGGTTTTCCCCCTCCGAGATAGACATCCTCGTTGTCAACGTGTCATTGTTCTCACCAGCACCTTCGCTCACGGCTCGCATCATAAACAGGTATTGTGCCGGCCACGAGGGTGGGCAAAATGGGCGACCGCCTAGGTACAAGATGAGGAATGACATCAAGGCCTTCAACCTTACAGGAATGGGTTGCAGTGCAAGTGTTGTTGCCATTGATATGGTGCAGCAGCTGTTCAAGACTTACAAGAACTGCCTCGGAGTCGTTGTGAGCACAGAGGATCTAGGAGCACATTGGTACTGTGGAAGAGACAAAAAGATGATGCTTTCAAACTGTCTCTTCCGCACTGGAGGATGTTCCATGCTCTTCACAAACAGGACAGGGCTGAAAAACAGAGCGATCCTGAAACTGAAGCACATGGAGAGGACTCAGTTTGGTGCAGACGACGAGGCTTACAATTGCTGCATACAAGTGGAAGACGATGAAGGGTATGCCGGTTTTCGACTAACCAAGAGCCTAGTGAAGTCTGCAGCACAGGCTCTTACTGTGAACCTGCAGGGTATGGCCCCAAAGATTCTGCCACTGTGGGAACTGGTAAGGTTCTTTACATTTTCTCTCCGCAATGCCATGAAGAAGAGCGATAACAAAGTGGTGAAAAGGACAGCGATATTCAATGTGTTCGGTGGGGGTTTGAATTTAAAGTCAGGGATAGAGCACTTTTGTGTGCACCCTGGTGGGAGAGCAGTGATTGATGGGGTTGGGAAAGGTTTGAAGCTGAGTGAGTATGATCTTGAGCCTTCAAGAATGGCACTTCACCGTTGGGGGAACACTTCTGCTGGTGGGCTATGGTATGTTTTGGGTTACATGGAGGCTAAGAAGAGGCTCAAGAAGGGTGATAGGATCCTCATGATTAGCCTTGGGGCTGGGTTCAAGTGCAATAACTGTGTCTGGGAAGTTATGAGGGATCTCTCTGATCCTAATGTGTGGAAAGACTGCATTGACAGTTACCCTCCATCCACACTCAACAACCCCTTCAAGGAAAAGTATAGTTGGGTCAATGATGAATGTCTTAGCTTTGTGAGGTTGGATTTTAGCAGGATGGTCTTCTAGCTATAGGGGATGGATGGATACACAAAGAAAGATACAGTAATTCAGTTTCAGTAAAGTTAAGATAATTAAGAAGAGAAAGGAAAAGAAGAAGAAAAACTCTCACACTATATTTCTTTCCAACAATTATTAAATATTTGTTCTCGTCCTTGTTTTAAACATATTGTTACAGATTTGATCAGAGGAGAAAAGCAAGTGTAGAGTTAATTAATTTGTTTAGTTAAACTTCCATACCCTGTGTATTAAGTGTTGTTGATGAAATAAAGCCCATGTCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00573	97913	99627	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000573s00021785.1	PF08392.7	FAE1_CUT1_RppA	1	43	3.00E-14
Glyur000573s00021785.1	PF08392.7	FAE1_CUT1_RppA	57	213	6.40E-61
Glyur000573s00021785.1	PF08541.5	ACP_syn_III_C	244	327	5.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.026
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.216
SRR1811619	moderate drought stress	0.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.282
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.421
SRR2868004	Drought Stress(Tissue:root)	0.088
SRR2967015	Control (Tissue:root)	0.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	77.235
SRR9715740	Leave	95.453
SRR9715741	Leave	51.748
SRR9715739	Root	0.029
SRR9715742	Root	1.629
SRR9715743	Root	2.081

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.143
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.129
SRR8400027	Control-Root	2.782