Gene detail information of Glyur000575s00024825.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04240.1 | 1.00E-55 | AUX/IAA transcriptional regulator family protein |
| NR | XP_003637551.1 | 2.88E-101 | Auxin-induced protein [Medicago truncatula] |
| Swissprot | tr|P32294|AX22B_VIGRR | 5.00E-103 | Auxin-induced protein 22B |
| trEMBL | tr|G7ZZQ0|G7ZZQ0_MEDTR | 1.00E-101 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00575 | 40998 | 43115 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000575s00024825.1 | PF02309.11 | AUX_IAA | 14 | 192 | 2.50E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.726 |
| SRR1783600 | control | 6.772 |
| SRR1783602 | moderate drought stress | 10.715 |
| SRR1811619 | moderate drought stress | 10.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.836 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.216 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.167 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.068 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.408 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.150 |
| SRR2967015 | Control (Tissue:root) | 20.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.190 |
| SRR9715740 | Leave | 3.580 |
| SRR9715741 | Leave | 2.087 |
| SRR9715739 | Root | 4.469 |
| SRR9715742 | Root | 8.097 |
| SRR9715743 | Root | 7.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.152 |
| SRR8749028 | MeJA induced 9h | 30.258 |
| SRR8749029 | MeJA induced 9h | 47.390 |
| SRR8749030 | Uninduced | 16.758 |
| SRR8749031 | Uninduced | 4.539 |
| SRR8749032 | Uninduced | 10.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.962 |
| SRR8400027 | Control-Root | 20.753 |